Literature DB >> 23284365

Tetra-aqua-bis-(6-chloro-pyridine-3-carboxyl-ato-κO)nickel(II) tetra-hydrate.

Qiao-Hua Xia1, Zhong-Fu Guo, Li Liu, Jian-Quan Lv, Bing Li.   

Abstract

In the title compound, [Ni(C(6)H(3)ClNO(2))(2)(H(2)O)(4)]·4H(2)O, the Ni(II) ion is located on an inversion centre and is octa-hedrally coordinated by four O atoms from four water mol-ecules in the equatorial plane and two O atoms of two 6-chloro-3-carboxyl-ate ligands in axial positions. There are also four lattice water molecules present. The organic ligands are bound to the Ni(II) ion in a monodentate manner through a carboxyl-ate O atom. There is one strong intra-molecular O-H⋯O hydrogen bond and six inter-molecular O-H⋯O and O-H⋯N hydrogen-bonding inter-actions in the packing, resulting in a complex three-dimensional network structure.

Entities:  

Year:  2012        PMID: 23284365      PMCID: PMC3515138          DOI: 10.1107/S160053681204322X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to complexes based on 6-chloro­nicotinic acid, see: Long et al. (2007 ▶); Li et al. (2006 ▶).

Experimental

Crystal data

[Ni(C6H3ClNO2)2(H2O)4]·4H2O M = 515.91 Triclinic, a = 7.0245 (14) Å b = 7.3436 (15) Å c = 11.547 (2) Å α = 86.35 (3)° β = 77.78 (3)° γ = 64.55 (3)° V = 525.4 (2) Å3 Z = 1 Mo Kα radiation μ = 1.24 mm−1 T = 293 K 0.39 × 0.29 × 0.16 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.754, T max = 0.862 5167 measured reflections 2371 independent reflections 2170 reflections with I > 2σ(I) R int = 0.049

Refinement

R[F 2 > 2σ(F 2)] = 0.028 wR(F 2) = 0.076 S = 1.06 2371 reflections 134 parameters H-atom parameters constrained Δρmax = 0.47 e Å−3 Δρmin = −0.41 e Å−3 Data collection: RAPID-AUTO (Rigaku, 1998 ▶); cell refinement: RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681204322X/bq2376sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681204322X/bq2376Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C6H3ClNO2)2(H2O)4]·4H2OZ = 1
Mr = 515.91F(000) = 266
Triclinic, P1Dx = 1.630 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.0245 (14) ÅCell parameters from 4651 reflections
b = 7.3436 (15) Åθ = 3.1–27.5°
c = 11.547 (2) ŵ = 1.24 mm1
α = 86.35 (3)°T = 293 K
β = 77.78 (3)°Block, green
γ = 64.55 (3)°0.39 × 0.29 × 0.16 mm
V = 525.4 (2) Å3
Rigaku R-AXIS RAPID diffractometer2371 independent reflections
Radiation source: fine-focus sealed tube2170 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.049
ω scansθmax = 27.5°, θmin = 3.1°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −8→9
Tmin = 0.754, Tmax = 0.862k = −9→9
5167 measured reflectionsl = −14→14
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.028H-atom parameters constrained
wR(F2) = 0.076w = 1/[σ2(Fo2) + (0.0344P)2 + 0.1122P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max = 0.001
2371 reflectionsΔρmax = 0.47 e Å3
134 parametersΔρmin = −0.41 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.115 (6)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl0.49297 (8)−0.29064 (8)1.14788 (4)0.04615 (15)
Ni0.00000.00000.50000.02619 (12)
O10.1088 (2)−0.0624 (2)0.65419 (10)0.0345 (3)
O2−0.1079 (2)−0.1909 (2)0.76064 (10)0.0369 (3)
OW10.1737 (2)−0.2994 (2)0.44232 (11)0.0438 (3)
H1WB0.2196−0.39610.48380.066*
H1WA0.1310−0.33100.38970.066*
OW20.27477 (19)0.0432 (2)0.42777 (10)0.0354 (3)
H2WB0.28840.12610.46800.053*
H2WA0.23660.09780.36680.053*
OW30.3330 (2)0.3218 (2)0.55701 (12)0.0476 (3)
H3WB0.24300.35390.61680.071*
H3WA0.44860.25390.57470.071*
OW4−0.0265 (2)−0.5912 (2)0.73619 (11)0.0475 (3)
H4WB−0.0788−0.46820.74630.071*
H4WA−0.0208−0.64570.79920.071*
N0.1923 (2)−0.2769 (2)1.04439 (11)0.0334 (3)
C10.3679 (3)−0.2457 (3)1.02767 (14)0.0316 (3)
C20.4551 (3)−0.1812 (3)0.92311 (15)0.0362 (4)
H2A0.5800−0.16260.91590.043*
C30.3501 (3)−0.1457 (3)0.83059 (14)0.0347 (4)
H3A0.4023−0.10030.75930.042*
C40.1653 (2)−0.1777 (2)0.84378 (13)0.0273 (3)
C50.0943 (3)−0.2442 (3)0.95247 (13)0.0312 (3)
H5A−0.0282−0.26730.96200.037*
C60.0457 (2)−0.1415 (2)0.74546 (13)0.0270 (3)
U11U22U33U12U13U23
Cl0.0594 (3)0.0454 (3)0.0361 (2)−0.0180 (2)−0.0256 (2)0.00447 (19)
Ni0.03131 (17)0.03082 (19)0.02103 (16)−0.01728 (13)−0.00745 (11)0.00611 (10)
O10.0433 (6)0.0454 (8)0.0255 (5)−0.0280 (6)−0.0117 (5)0.0114 (5)
O20.0415 (6)0.0468 (8)0.0335 (6)−0.0283 (6)−0.0127 (5)0.0120 (5)
OW10.0630 (8)0.0321 (7)0.0362 (6)−0.0166 (6)−0.0186 (6)0.0031 (5)
OW20.0389 (6)0.0457 (8)0.0303 (5)−0.0251 (6)−0.0116 (5)0.0085 (5)
OW30.0432 (7)0.0526 (9)0.0462 (7)−0.0186 (7)−0.0140 (6)0.0092 (6)
OW40.0700 (9)0.0437 (9)0.0328 (6)−0.0308 (7)−0.0047 (6)0.0033 (6)
N0.0412 (8)0.0352 (9)0.0235 (6)−0.0162 (6)−0.0076 (6)0.0065 (5)
C10.0383 (8)0.0279 (9)0.0266 (7)−0.0102 (7)−0.0114 (6)0.0018 (6)
C20.0357 (8)0.0462 (11)0.0326 (8)−0.0224 (8)−0.0093 (7)0.0054 (7)
C30.0387 (9)0.0428 (11)0.0264 (7)−0.0224 (8)−0.0052 (7)0.0061 (7)
C40.0313 (7)0.0262 (8)0.0241 (7)−0.0125 (6)−0.0053 (6)0.0036 (6)
C50.0347 (8)0.0342 (10)0.0263 (7)−0.0166 (7)−0.0067 (6)0.0062 (6)
C60.0330 (8)0.0245 (8)0.0232 (7)−0.0119 (6)−0.0066 (6)0.0037 (6)
Cl—C11.7369 (16)OW1—H1WB0.8140
Ni—O1i2.0335 (12)OW1—H1WA0.8174
Ni—O12.0335 (12)C4—C51.389 (2)
Ni—OW12.0742 (16)C4—C31.392 (2)
Ni—OW1i2.0742 (16)C2—C31.374 (2)
Ni—OW22.0814 (12)C2—H2A0.9300
Ni—OW2i2.0814 (12)N—C51.339 (2)
O1—C61.2607 (18)C5—H5A0.9300
C6—O21.2550 (19)C3—H3A0.9300
C6—C41.496 (2)OW4—H4WB0.8210
C1—N1.321 (2)OW4—H4WA0.8080
C1—C21.386 (2)OW3—H3WB0.8000
OW2—H2WB0.8378OW3—H3WA0.8121
OW2—H2WA0.8252
O1i—Ni—O1180.00 (2)Ni—OW2—H2WB112.2
O1i—Ni—OW188.84 (6)Ni—OW2—H2WA97.3
O1—Ni—OW191.16 (6)H2WB—OW2—H2WA108.5
O1i—Ni—OW1i91.16 (6)Ni—OW1—H1WB126.3
O1—Ni—OW1i88.84 (6)Ni—OW1—H1WA114.0
OW1—Ni—OW1i180.0H1WB—OW1—H1WA108.8
O1i—Ni—OW293.00 (5)C5—C4—C3117.46 (14)
O1—Ni—OW287.00 (5)C5—C4—C6120.79 (14)
OW1—Ni—OW287.71 (6)C3—C4—C6121.74 (14)
OW1i—Ni—OW292.29 (6)C3—C2—C1117.44 (15)
O1i—Ni—OW2i87.00 (5)C3—C2—H2A121.3
O1—Ni—OW2i93.00 (5)C1—C2—H2A121.3
OW1—Ni—OW2i92.29 (6)C1—N—C5116.77 (14)
OW1i—Ni—OW2i87.71 (6)N—C5—C4123.71 (15)
OW2—Ni—OW2i180.00 (3)N—C5—H5A118.1
C6—O1—Ni128.83 (10)C4—C5—H5A118.1
O2—C6—O1125.72 (14)C2—C3—C4119.83 (15)
O2—C6—C4117.79 (14)C2—C3—H3A120.1
O1—C6—C4116.49 (13)C4—C3—H3A120.1
N—C1—C2124.78 (14)H4WB—OW4—H4WA110.3
N—C1—Cl115.91 (13)H3WB—OW3—H3WA107.9
C2—C1—Cl119.31 (13)
D—H···AD—HH···AD···AD—H···A
OW2—H2WA···O2i0.831.832.6401 (18)167
OW1—H1WB···OW3ii0.812.072.869 (2)167
OW1—H1WA···OW4iii0.821.972.7915 (19)179
OW4—H4WA···Niv0.812.142.850 (2)147
OW3—H3WB···OW4v0.801.992.763 (2)163
OW3—H3WA···OW2vi0.812.212.933 (2)149
OW2—H2WB···OW30.841.982.819 (2)177
OW4—H4WB···O20.821.972.764 (2)162
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
OW2—H2WA⋯O2i 0.831.832.6401 (18)167
OW1—H1WB⋯OW3ii 0.812.072.869 (2)167
OW1—H1WA⋯OW4iii 0.821.972.7915 (19)179
OW4—H4WA⋯Niv 0.812.142.850 (2)147
OW3—H3WB⋯OW4v 0.801.992.763 (2)163
OW3—H3WA⋯OW2vi 0.812.212.933 (2)149
OW2—H2WB⋯OW30.841.982.819 (2)177
OW4—H4WB⋯O20.821.972.764 (2)162

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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1.  Synthesis and crystal structure of a 6-chloro-nicotinate salt of a one-dimensional cationic nickel(II) coordination polymer with 4,4'-bi-pyridine.

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