| Literature DB >> 32280492 |
Nives Politeo1, Mateja Pisačić2, Marijana Đaković2, Vesna Sokol1, Boris-Marko Kukovec1.
Abstract
A one-dimensional nickel(II) coordination polymer with the mixed ligands 6-fluoro-nicotinate (6-Fnic) and 4,4'-bi-pyridine (4,4'-bpy), namely, catena-poly[[di-aqua-bis-(6-fluoro-pyridine-3-carboxyl-ato-κO)nickel(II)]-μ-4,4'-bi-pyri-dine-κ2 N:N'] trihydrate], {[Ni(6-Fnic)2(4,4'-bpy)(H2O)2]·3H2O} n , (1), was prepared by the reaction of nickel(II) sulfate hepta-hydrate, 6-fluoro-nicotinic acid (C6H4FNO2) and 4,4'-bi-pyridine (C10H8N2) in a mixture of water and ethanol. The nickel(II) ion in 1 is octa-hedrally coordinated by the O atoms of two water mol-ecules, two O atoms from O-monodentate 6-fluoro-nicotinate ligands and two N atoms from bridging 4,4'-bi-pyridine ligands, forming a trans isomer. The bridging 4,4'-bi-pyridine ligands connect symmetry-related nickel(II) ions into infinite one-dimensional polymeric chains running in the [10] direction. In the extended structure of 1, the polymeric chains and lattice water mol-ecules are connected into a three-dimensional hydrogen-bonded network via strong O-H⋯O and O-H⋯N hydrogen bonds, leading to the formation of distinct hydrogen-bond ring motifs: octa-meric R 8 8(24) and hexa-meric R 8 6(16) loops. © Politeo et al. 2020.Entities:
Keywords: 4,4′-bipyridine; 6-fluoronicotinic acid; coordination polymer; crystal structure; hydrogen-bond motif; nickel(II)
Year: 2020 PMID: 32280492 PMCID: PMC7133043 DOI: 10.1107/S2056989020003023
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The repeating polymeric unit of 1, showing the atomic numbering scheme of the asymmetric unit. The displacement ellipsoids are drawn at the 40% probability level.
Figure 2An infinite one-dimensional polymeric chain of 1 showing the connectivity.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O1—H12⋯O4 | 0.82 (1) | 2.05 (1) | 2.848 (2) | 166 (2) |
| O1—H11⋯O3i | 0.82 (1) | 1.88 (1) | 2.674 (2) | 163 (2) |
| O4—H41⋯O5ii | 0.82 (1) | 1.99 (1) | 2.811 (3) | 175 (3) |
| O5—H51⋯O3iii | 0.82 (1) | 2.24 (3) | 2.964 (4) | 147 (4) |
| O5—H52⋯N1iv | 0.82 (1) | 2.41 (3) | 3.100 (3) | 142 (4) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .
Figure 3A fragment of the infinite two-dimensional hydrogen-bonded network of 1 viewed along the [10] direction. The polymeric chains, represented as monomeric molecules in this projection, and lattice water molecules are connected by O—H⋯O and O—H⋯N hydrogen bonds (represented by dotted lines) within the network. The polymeric chains are additionally assembled by π–π interactions between symmetry-related 6-fluoronicotinate pyridine rings.
Figure 4The distinctive hydrogen-bonded ring motifs (represented by the dotted lines) found within the two-dimensional network of 1 viewed along the [10] direction, viz. octameric (24), hexameric (16) and intramolecular (6) motifs. The various symmetry-related polymeric chains (represented as momomeric molecules in this projection) are shown in brown, green, blue and red (see text).
Figure 5Experimental (bottom) and calculated (top) PXRD spectra of 1.
Experimental details
| Crystal data | |
| Chemical formula | {[Ni(C6H3FNO2)2(C10H8N2)(H2O)2]·3H2O} |
|
| 585.16 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 296 |
|
| 12.1175 (5), 18.7705 (6), 12.3246 (4) |
| β (°) | 110.232 (4) |
|
| 2630.29 (17) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 0.81 |
| Crystal size (mm) | 0.15 × 0.10 × 0.08 |
| Data collection | |
| Diffractometer | Oxford Diffraction Xcalibur2 diffractometer with Sapphire 3 CCD detector |
| Absorption correction | Multi-scan ( |
|
| 0.899, 1.000 |
| No. of measured, independent and observed [ | 5540, 2316, 1960 |
|
| 0.032 |
| (sin θ/λ)max (Å−1) | 0.595 |
| Refinement | |
|
| 0.032, 0.073, 1.03 |
| No. of reflections | 2316 |
| No. of parameters | 189 |
| No. of restraints | 7 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.30, −0.22 |
Computer programs: CrysAlis PRO (Rigaku, 2018 ▸), SHELXT (Sheldrick, 2015a ▸), SHELXL2018/3 (Sheldrick, 2015b ▸) and Mercury (Macrae et al., 2020 ▸).
| [Ni(C6H3FNO2)2(C10H8N2)(H2O)2]·3H2O | |
| Monoclinic, | Mo |
| Cell parameters from 2838 reflections | |
| θ = 4.6–31.4° | |
| µ = 0.81 mm−1 | |
| β = 110.232 (4)° | |
| Prism, light-blue | |
| 0.15 × 0.10 × 0.08 mm |
| Oxford Diffraction Xcalibur2 diffractometer with Sapphire 3 CCD detector | 1960 reflections with |
| ω–scan | |
| Absorption correction: multi-scan (CrysAlisPro; Rigaku, 2018) | θmax = 25.0°, θmin = 4.1° |
| 5540 measured reflections | |
| 2316 independent reflections |
| Refinement on | 7 restraints |
| Least-squares matrix: full | Hydrogen site location: mixed |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 2316 reflections | Δρmax = 0.30 e Å−3 |
| 189 parameters | Δρmin = −0.22 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Ni1 | 0.250000 | 0.750000 | 0.000000 | 0.02551 (12) | |
| N1 | 0.2304 (2) | 0.89116 (14) | 0.49414 (19) | 0.0627 (7) | |
| N2 | 0.16406 (15) | 0.65554 (9) | 0.00035 (13) | 0.0283 (4) | |
| O1 | 0.41435 (14) | 0.69897 (8) | 0.06960 (13) | 0.0365 (4) | |
| H12 | 0.429 (2) | 0.6719 (11) | 0.1244 (14) | 0.044* | |
| H11 | 0.416 (2) | 0.6772 (11) | 0.0127 (14) | 0.044* | |
| O2 | 0.25264 (13) | 0.77061 (8) | 0.16466 (12) | 0.0349 (4) | |
| O3 | 0.12044 (17) | 0.85740 (11) | 0.13890 (14) | 0.0661 (6) | |
| O4 | 0.500000 | 0.59666 (15) | 0.250000 | 0.0563 (7) | |
| H41 | 0.539 (2) | 0.5710 (13) | 0.223 (3) | 0.068* | |
| O5 | 0.3692 (3) | 0.51516 (15) | 0.3540 (2) | 0.1055 (9) | |
| H51 | 0.401 (4) | 0.4760 (12) | 0.372 (3) | 0.127* | |
| H52 | 0.374 (4) | 0.533 (2) | 0.416 (2) | 0.127* | |
| F1 | 0.35722 (18) | 0.86788 (12) | 0.67067 (13) | 0.0934 (6) | |
| C1 | 0.1919 (3) | 0.87822 (15) | 0.3797 (2) | 0.0542 (7) | |
| H1 | 0.128197 | 0.904258 | 0.332209 | 0.065* | |
| C2 | 0.2426 (2) | 0.82806 (12) | 0.32961 (19) | 0.0385 (5) | |
| C3 | 0.3359 (2) | 0.78930 (14) | 0.4018 (2) | 0.0438 (6) | |
| H3 | 0.371596 | 0.754740 | 0.371012 | 0.053* | |
| C4 | 0.3763 (2) | 0.80150 (16) | 0.5186 (2) | 0.0527 (7) | |
| H4 | 0.438816 | 0.776057 | 0.569207 | 0.063* | |
| C5 | 0.3193 (3) | 0.85305 (17) | 0.5559 (2) | 0.0600 (8) | |
| C6 | 0.2003 (2) | 0.81802 (12) | 0.20071 (19) | 0.0373 (5) | |
| C7 | 0.1834 (2) | 0.61732 (12) | 0.09598 (18) | 0.0420 (6) | |
| H7 | 0.240902 | 0.632605 | 0.163889 | 0.050* | |
| C8 | 0.1220 (2) | 0.55619 (12) | 0.09870 (19) | 0.0452 (6) | |
| H8 | 0.138908 | 0.530975 | 0.167511 | 0.054* | |
| C9 | 0.03574 (17) | 0.53205 (10) | 0.00029 (16) | 0.0266 (4) | |
| C10 | 0.0173 (2) | 0.57183 (12) | −0.09902 (18) | 0.0377 (5) | |
| H10 | −0.039219 | 0.557751 | −0.168379 | 0.045* | |
| C11 | 0.0828 (2) | 0.63211 (12) | −0.09476 (17) | 0.0375 (5) | |
| H11A | 0.069114 | 0.657839 | −0.162659 | 0.045* |
| Ni1 | 0.0328 (2) | 0.0207 (2) | 0.02366 (19) | −0.00983 (16) | 0.01060 (15) | −0.00195 (14) |
| N1 | 0.0853 (19) | 0.0660 (16) | 0.0442 (13) | −0.0026 (14) | 0.0320 (14) | −0.0202 (11) |
| N2 | 0.0347 (9) | 0.0245 (9) | 0.0257 (9) | −0.0092 (7) | 0.0103 (8) | −0.0014 (7) |
| O1 | 0.0415 (9) | 0.0348 (9) | 0.0312 (8) | −0.0032 (7) | 0.0101 (7) | 0.0016 (6) |
| O2 | 0.0493 (9) | 0.0301 (8) | 0.0292 (8) | −0.0061 (7) | 0.0183 (7) | −0.0036 (6) |
| O3 | 0.0746 (13) | 0.0801 (14) | 0.0386 (10) | 0.0310 (12) | 0.0133 (10) | −0.0040 (9) |
| O4 | 0.0750 (19) | 0.0426 (16) | 0.0524 (16) | 0.000 | 0.0233 (14) | 0.000 |
| O5 | 0.173 (3) | 0.0724 (18) | 0.101 (2) | 0.0023 (18) | 0.085 (2) | 0.0076 (15) |
| F1 | 0.1125 (15) | 0.1310 (18) | 0.0359 (9) | −0.0144 (13) | 0.0247 (10) | −0.0284 (10) |
| C1 | 0.0651 (17) | 0.0574 (17) | 0.0441 (14) | 0.0054 (14) | 0.0239 (13) | −0.0079 (12) |
| C2 | 0.0444 (13) | 0.0405 (14) | 0.0350 (12) | −0.0078 (11) | 0.0194 (11) | −0.0058 (10) |
| C3 | 0.0456 (13) | 0.0506 (16) | 0.0393 (13) | −0.0050 (12) | 0.0200 (11) | −0.0038 (11) |
| C4 | 0.0487 (15) | 0.072 (2) | 0.0356 (13) | −0.0083 (13) | 0.0128 (12) | 0.0001 (12) |
| C5 | 0.073 (2) | 0.078 (2) | 0.0317 (14) | −0.0204 (17) | 0.0214 (14) | −0.0136 (13) |
| C6 | 0.0427 (13) | 0.0384 (13) | 0.0325 (12) | −0.0056 (11) | 0.0153 (11) | −0.0033 (10) |
| C7 | 0.0527 (14) | 0.0393 (14) | 0.0252 (11) | −0.0246 (11) | 0.0022 (10) | 0.0008 (9) |
| C8 | 0.0619 (15) | 0.0379 (14) | 0.0273 (11) | −0.0245 (12) | 0.0047 (11) | 0.0071 (10) |
| C9 | 0.0331 (10) | 0.0226 (11) | 0.0243 (10) | −0.0065 (8) | 0.0103 (9) | −0.0025 (8) |
| C10 | 0.0444 (13) | 0.0368 (13) | 0.0267 (11) | −0.0196 (10) | 0.0057 (10) | −0.0013 (9) |
| C11 | 0.0478 (13) | 0.0351 (13) | 0.0256 (11) | −0.0181 (11) | 0.0074 (10) | 0.0051 (9) |
| Ni1—O2i | 2.0553 (13) | F1—C5 | 1.357 (3) |
| Ni1—O2 | 2.0553 (13) | C1—C2 | 1.381 (3) |
| Ni1—N2i | 2.0570 (16) | C1—H1 | 0.9300 |
| Ni1—N2 | 2.0570 (16) | C2—C3 | 1.380 (3) |
| Ni1—O1i | 2.1067 (16) | C2—C6 | 1.503 (3) |
| Ni1—O1 | 2.1067 (16) | C3—C4 | 1.370 (3) |
| N1—C5 | 1.298 (4) | C3—H3 | 0.9300 |
| N1—C1 | 1.345 (3) | C4—C5 | 1.358 (4) |
| N2—C11 | 1.319 (3) | C4—H4 | 0.9300 |
| N2—C7 | 1.330 (3) | C7—C8 | 1.374 (3) |
| O1—H12 | 0.815 (10) | C7—H7 | 0.9300 |
| O1—H11 | 0.819 (9) | C8—C9 | 1.376 (3) |
| O2—C6 | 1.260 (3) | C8—H8 | 0.9300 |
| O3—C6 | 1.246 (3) | C9—C10 | 1.384 (3) |
| O4—H41 | 0.822 (10) | C9—C9iii | 1.481 (4) |
| O4—H41ii | 0.822 (10) | C10—C11 | 1.373 (3) |
| O5—H51 | 0.823 (10) | C10—H10 | 0.9300 |
| O5—H52 | 0.820 (10) | C11—H11A | 0.9300 |
| O2i—Ni1—O2 | 180.00 (8) | C3—C2—C6 | 121.3 (2) |
| O2i—Ni1—N2i | 89.73 (6) | C1—C2—C6 | 121.1 (2) |
| O2—Ni1—N2i | 90.27 (6) | C4—C3—C2 | 120.3 (2) |
| O2i—Ni1—N2 | 90.27 (6) | C4—C3—H3 | 119.9 |
| O2—Ni1—N2 | 89.73 (6) | C2—C3—H3 | 119.9 |
| N2i—Ni1—N2 | 180.0 | C5—C4—C3 | 115.9 (3) |
| O2i—Ni1—O1i | 89.65 (6) | C5—C4—H4 | 122.1 |
| O2—Ni1—O1i | 90.35 (6) | C3—C4—H4 | 122.1 |
| N2i—Ni1—O1i | 90.87 (6) | N1—C5—F1 | 114.3 (3) |
| N2—Ni1—O1i | 89.13 (6) | N1—C5—C4 | 127.6 (2) |
| O2i—Ni1—O1 | 90.35 (6) | F1—C5—C4 | 118.1 (3) |
| O2—Ni1—O1 | 89.65 (6) | O3—C6—O2 | 125.6 (2) |
| N2i—Ni1—O1 | 89.13 (6) | O3—C6—C2 | 118.7 (2) |
| N2—Ni1—O1 | 90.87 (6) | O2—C6—C2 | 115.6 (2) |
| O1i—Ni1—O1 | 180.0 | N2—C7—C8 | 122.8 (2) |
| C5—N1—C1 | 115.6 (2) | N2—C7—H7 | 118.6 |
| C11—N2—C7 | 117.17 (18) | C8—C7—H7 | 118.6 |
| C11—N2—Ni1 | 120.57 (13) | C7—C8—C9 | 120.4 (2) |
| C7—N2—Ni1 | 122.19 (14) | C7—C8—H8 | 119.8 |
| Ni1—O1—H12 | 122.0 (17) | C9—C8—H8 | 119.8 |
| Ni1—O1—H11 | 100.5 (17) | C8—C9—C10 | 116.28 (18) |
| H12—O1—H11 | 110 (2) | C8—C9—C9iii | 122.5 (2) |
| C6—O2—Ni1 | 130.05 (14) | C10—C9—C9iii | 121.2 (2) |
| H41—O4—H41ii | 108 (4) | C11—C10—C9 | 119.77 (19) |
| H51—O5—H52 | 103 (3) | C11—C10—H10 | 120.1 |
| N1—C1—C2 | 123.0 (3) | C9—C10—H10 | 120.1 |
| N1—C1—H1 | 118.5 | N2—C11—C10 | 123.57 (19) |
| C2—C1—H1 | 118.5 | N2—C11—H11A | 118.2 |
| C3—C2—C1 | 117.6 (2) | C10—C11—H11A | 118.2 |
| C5—N1—C1—C2 | −0.2 (4) | C1—C2—C6—O3 | 2.1 (3) |
| N1—C1—C2—C3 | 0.9 (4) | C3—C2—C6—O2 | 2.5 (3) |
| N1—C1—C2—C6 | −177.0 (2) | C1—C2—C6—O2 | −179.8 (2) |
| C1—C2—C3—C4 | −0.7 (4) | C11—N2—C7—C8 | −0.6 (4) |
| C6—C2—C3—C4 | 177.2 (2) | Ni1—N2—C7—C8 | 176.35 (19) |
| C2—C3—C4—C5 | −0.2 (4) | N2—C7—C8—C9 | −0.4 (4) |
| C1—N1—C5—F1 | 179.2 (2) | C7—C8—C9—C10 | 1.1 (3) |
| C1—N1—C5—C4 | −0.9 (4) | C7—C8—C9—C9iii | −177.8 (3) |
| C3—C4—C5—N1 | 1.1 (4) | C8—C9—C10—C11 | −0.8 (3) |
| C3—C4—C5—F1 | −179.0 (2) | C9iii—C9—C10—C11 | 178.1 (2) |
| Ni1—O2—C6—O3 | 11.0 (3) | C7—N2—C11—C10 | 1.0 (3) |
| Ni1—O2—C6—C2 | −166.92 (13) | Ni1—N2—C11—C10 | −176.03 (18) |
| C3—C2—C6—O3 | −175.6 (2) | C9—C10—C11—N2 | −0.3 (4) |
| H··· | ||||
| O1—H12···O4 | 0.82 (1) | 2.05 (1) | 2.848 (2) | 166 (2) |
| O1—H11···O3i | 0.82 (1) | 1.88 (1) | 2.674 (2) | 163 (2) |
| O4—H41···O5ii | 0.82 (1) | 1.99 (1) | 2.811 (3) | 175 (3) |
| O5—H51···O3iv | 0.82 (1) | 2.24 (3) | 2.964 (4) | 147 (4) |
| O5—H52···N1v | 0.82 (1) | 2.41 (3) | 3.100 (3) | 142 (4) |
| C11—H11 | 0.93 | 2.55 | 3.040 (2) | 113 |