Literature DB >> 30692668

Pseudogene repair driven by selection pressure applied in experimental evolution.

Amitesh Anand1, Connor A Olson1, Laurence Yang1, Anand V Sastry1, Edward Catoiu1, Kumari Sonal Choudhary1, Patrick V Phaneuf1, Troy E Sandberg1, Sibei Xu1, Ying Hefner1, Richard Szubin1, Adam M Feist1,2, Bernhard O Palsson3,4.   

Abstract

Pseudogenes represent open reading frames that have been damaged by mutations, rendering the gene product non-functional. Pseudogenes are found in many genomes and are not always eliminated, even if they are potentially 'wasteful'. This raises a fundamental question about their prevalence. Here we report pseudogene efeU repair that restores the iron uptake system of Escherichia coli under a designed selection pressure during adaptive laboratory evolution.

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Year:  2019        PMID: 30692668     DOI: 10.1038/s41564-018-0340-2

Source DB:  PubMed          Journal:  Nat Microbiol        ISSN: 2058-5276            Impact factor:   17.745


  10 in total

Review 1.  Evolutionary Repair Experiments as a Window to the Molecular Diversity of Life.

Authors:  Thomas LaBar; Yu-Ying Phoebe Hsieh; Marco Fumasoni; Andrew W Murray
Journal:  Curr Biol       Date:  2020-05-18       Impact factor: 10.834

2.  Strain-Specific Metabolic Requirements Revealed by a Defined Minimal Medium for Systems Analyses of Staphylococcus aureus.

Authors:  Henrique Machado; Liam L Weng; Nicholas Dillon; Yara Seif; Michelle Holland; Jonathan E Pekar; Jonathan M Monk; Victor Nizet; Bernhard O Palsson; Adam M Feist
Journal:  Appl Environ Microbiol       Date:  2019-10-16       Impact factor: 4.792

3.  A Carbonic Anhydrase Pseudogene Sensitizes Select Brucella Lineages to Low CO2 Tension.

Authors:  Lydia M Varesio; Jonathan W Willett; Aretha Fiebig; Sean Crosson
Journal:  J Bacteriol       Date:  2019-10-21       Impact factor: 3.490

4.  Laboratory evolution of synthetic electron transport system variants reveals a larger metabolic respiratory system and its plasticity.

Authors:  Amitesh Anand; Arjun Patel; Ke Chen; Connor A Olson; Patrick V Phaneuf; Cameron Lamoureux; Ying Hefner; Richard Szubin; Adam M Feist; Bernhard O Palsson
Journal:  Nat Commun       Date:  2022-06-27       Impact factor: 17.694

5.  Prognostic Implications of Novel Ten-Gene Signature in Uveal Melanoma.

Authors:  Huan Luo; Chao Ma; Jinping Shao; Jing Cao
Journal:  Front Oncol       Date:  2020-10-30       Impact factor: 6.244

6.  LncRNA EBLN3P promotes the progression of osteosarcoma through modifying the miR-224-5p/Rab10 signaling axis.

Authors:  Shuhong Dai; Ning Li; Ming Zhou; Yue Yuan; Ding Yue; Tao Li; Xiaowei Zhang
Journal:  Sci Rep       Date:  2021-01-21       Impact factor: 4.379

7.  A systems approach discovers the role and characteristics of seven LysR type transcription factors in Escherichia coli.

Authors:  Irina A Rodionova; Ye Gao; Jonathan Monk; Ying Hefner; Nicholas Wong; Richard Szubin; Hyun Gyu Lim; Dmitry A Rodionov; Zhongge Zhang; Milton H Saier; Bernhard O Palsson
Journal:  Sci Rep       Date:  2022-05-04       Impact factor: 4.996

8.  OxyR Is a Convergent Target for Mutations Acquired during Adaptation to Oxidative Stress-Prone Metabolic States.

Authors:  Amitesh Anand; Ke Chen; Edward Catoiu; Anand V Sastry; Connor A Olson; Troy E Sandberg; Yara Seif; Sibei Xu; Richard Szubin; Laurence Yang; Adam M Feist; Bernhard O Palsson
Journal:  Mol Biol Evol       Date:  2020-03-01       Impact factor: 16.240

9.  The Escherichia coli transcriptome mostly consists of independently regulated modules.

Authors:  Anand V Sastry; Ye Gao; Richard Szubin; Ying Hefner; Sibei Xu; Donghyuk Kim; Kumari Sonal Choudhary; Laurence Yang; Zachary A King; Bernhard O Palsson
Journal:  Nat Commun       Date:  2019-12-04       Impact factor: 14.919

10.  Restoration of fitness lost due to dysregulation of the pyruvate dehydrogenase complex is triggered by ribosomal binding site modifications.

Authors:  Amitesh Anand; Connor A Olson; Anand V Sastry; Arjun Patel; Richard Szubin; Laurence Yang; Adam M Feist; Bernhard O Palsson
Journal:  Cell Rep       Date:  2021-04-06       Impact factor: 9.423

  10 in total

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