Literature DB >> 32418337

Machine learning techniques for biomedical image segmentation: An overview of technical aspects and introduction to state-of-art applications.

Hyunseok Seo1, Masoud Badiei Khuzani1, Varun Vasudevan2, Charles Huang3, Hongyi Ren1, Ruoxiu Xiao1, Xiao Jia1, Lei Xing1.   

Abstract

In recent years, significant progress has been made in developing more accurate and efficient machine learning algorithms for segmentation of medical and natural images. In this review article, we highlight the imperative role of machine learning algorithms in enabling efficient and accurate segmentation in the field of medical imaging. We specifically focus on several key studies pertaining to the application of machine learning methods to biomedical image segmentation. We review classical machine learning algorithms such as Markov random fields, k-means clustering, random forest, etc. Although such classical learning models are often less accurate compared to the deep-learning techniques, they are often more sample efficient and have a less complex structure. We also review different deep-learning architectures, such as the artificial neural networks (ANNs), the convolutional neural networks (CNNs), and the recurrent neural networks (RNNs), and present the segmentation results attained by those learning models that were published in the past 3 yr. We highlight the successes and limitations of each machine learning paradigm. In addition, we discuss several challenges related to the training of different machine learning models, and we present some heuristics to address those challenges.
© 2019 American Association of Physicists in Medicine.

Entities:  

Keywords:  deep learning; machine learning; medical Image; overview; segmentation

Mesh:

Year:  2020        PMID: 32418337      PMCID: PMC7338207          DOI: 10.1002/mp.13649

Source DB:  PubMed          Journal:  Med Phys        ISSN: 0094-2405            Impact factor:   4.071


  42 in total

Review 1.  Representation learning: a review and new perspectives.

Authors:  Yoshua Bengio; Aaron Courville; Pascal Vincent
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2013-08       Impact factor: 6.226

Review 2.  A review of atlas-based segmentation for magnetic resonance brain images.

Authors:  Mariano Cabezas; Arnau Oliver; Xavier Lladó; Jordi Freixenet; Meritxell Bach Cuadra
Journal:  Comput Methods Programs Biomed       Date:  2011-08-25       Impact factor: 5.428

3.  A recursive ensemble organ segmentation (REOS) framework: application in brain radiotherapy.

Authors:  Haibin Chen; Weiguo Lu; Mingli Chen; Linghong Zhou; Robert Timmerman; Dan Tu; Lucien Nedzi; Zabi Wardak; Steve Jiang; Xin Zhen; Xuejun Gu
Journal:  Phys Med Biol       Date:  2019-01-11       Impact factor: 3.609

4.  Development of deep neural network for individualized hepatobiliary toxicity prediction after liver SBRT.

Authors:  Bulat Ibragimov; Diego Toesca; Daniel Chang; Yixuan Yuan; Albert Koong; Lei Xing
Journal:  Med Phys       Date:  2018-09-10       Impact factor: 4.071

5.  Automatic Segmentation of MR Brain Images With a Convolutional Neural Network.

Authors:  Pim Moeskops; Max A Viergever; Adrienne M Mendrik; Linda S de Vries; Manon J N L Benders; Ivana Isgum
Journal:  IEEE Trans Med Imaging       Date:  2016-03-30       Impact factor: 10.048

6.  Brain Tumor Segmentation Using Convolutional Neural Networks in MRI Images.

Authors:  Sergio Pereira; Adriano Pinto; Victor Alves; Carlos A Silva
Journal:  IEEE Trans Med Imaging       Date:  2016-03-04       Impact factor: 10.048

7.  Multiregion segmentation of bladder cancer structures in MRI with progressive dilated convolutional networks.

Authors:  Jose Dolz; Xiaopan Xu; Jérôme Rony; Jing Yuan; Yang Liu; Eric Granger; Christian Desrosiers; Xi Zhang; Ismail Ben Ayed; Hongbing Lu
Journal:  Med Phys       Date:  2018-11-08       Impact factor: 4.071

8.  UNet++: A Nested U-Net Architecture for Medical Image Segmentation.

Authors:  Zongwei Zhou; Md Mahfuzur Rahman Siddiquee; Nima Tajbakhsh; Jianming Liang
Journal:  Deep Learn Med Image Anal Multimodal Learn Clin Decis Support (2018)       Date:  2018-09-20

9.  Segmentation of organs-at-risks in head and neck CT images using convolutional neural networks.

Authors:  Bulat Ibragimov; Lei Xing
Journal:  Med Phys       Date:  2017-02       Impact factor: 4.071

10.  Automatic liver tumor segmentation in CT with fully convolutional neural networks and object-based postprocessing.

Authors:  Grzegorz Chlebus; Andrea Schenk; Jan Hendrik Moltz; Bram van Ginneken; Horst Karl Hahn; Hans Meine
Journal:  Sci Rep       Date:  2018-10-19       Impact factor: 4.379

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  21 in total

1.  Automatic Evaluation of Histological Prognostic Factors Using Two Consecutive Convolutional Neural Networks on Kidney Samples.

Authors:  Elise Marechal; Adrien Jaugey; Georges Tarris; Michel Paindavoine; Jean Seibel; Laurent Martin; Mathilde Funes de la Vega; Thomas Crepin; Didier Ducloux; Gilbert Zanetta; Sophie Felix; Pierre Henri Bonnot; Florian Bardet; Luc Cormier; Jean-Michel Rebibou; Mathieu Legendre
Journal:  Clin J Am Soc Nephrol       Date:  2021-12-03       Impact factor: 8.237

2.  Prediction of Early Treatment Response to Initial Conventional Transarterial Chemoembolization Therapy for Hepatocellular Carcinoma by Machine-Learning Model Based on Computed Tomography.

Authors:  Zhi Dong; Yingyu Lin; Fangzeng Lin; Xuyi Luo; Zhi Lin; Yinhong Zhang; Lujie Li; Zi-Ping Li; Shi-Ting Feng; Huasong Cai; Zhenpeng Peng
Journal:  J Hepatocell Carcinoma       Date:  2021-11-30

3.  Artificial Intelligence in Radiation Therapy.

Authors:  Yabo Fu; Hao Zhang; Eric D Morris; Carri K Glide-Hurst; Suraj Pai; Alberto Traverso; Leonard Wee; Ibrahim Hadzic; Per-Ivar Lønne; Chenyang Shen; Tian Liu; Xiaofeng Yang
Journal:  IEEE Trans Radiat Plasma Med Sci       Date:  2021-08-24

4.  Novel Machine-Learning Based Framework Using Electroretinography Data for the Detection of Early-Stage Glaucoma.

Authors:  Mohan Kumar Gajendran; Landon J Rohowetz; Peter Koulen; Amirfarhang Mehdizadeh
Journal:  Front Neurosci       Date:  2022-05-04       Impact factor: 5.152

5.  Hippocampus Segmentation Using U-Net Convolutional Network from Brain Magnetic Resonance Imaging (MRI).

Authors:  Ruhul Amin Hazarika; Arnab Kumar Maji; Raplang Syiem; Samarendra Nath Sur; Debdatta Kandar
Journal:  J Digit Imaging       Date:  2022-03-18       Impact factor: 4.903

Review 6.  Artificial intelligence and machine learning for medical imaging: A technology review.

Authors:  Ana Barragán-Montero; Umair Javaid; Gilmer Valdés; Dan Nguyen; Paul Desbordes; Benoit Macq; Siri Willems; Liesbeth Vandewinckele; Mats Holmström; Fredrik Löfman; Steven Michiels; Kevin Souris; Edmond Sterpin; John A Lee
Journal:  Phys Med       Date:  2021-05-09       Impact factor: 2.685

7.  Deep Neural Network With Consistency Regularization of Multi-Output Channels for Improved Tumor Detection and Delineation.

Authors:  Hyunseok Seo; Lequan Yu; Hongyi Ren; Xiaomeng Li; Liyue Shen; Lei Xing
Journal:  IEEE Trans Med Imaging       Date:  2021-11-30       Impact factor: 10.048

8.  Segmentation of Organs and Tumor within Brain Magnetic Resonance Images Using K-Nearest Neighbor Classification.

Authors:  S A Yoganathan; Rui Zhang
Journal:  J Med Phys       Date:  2022-03-31

9.  Glass-cutting medical images via a mechanical image segmentation method based on crack propagation.

Authors:  Yaqi Huang; Ge Hu; Changjin Ji; Huahui Xiong
Journal:  Nat Commun       Date:  2020-11-09       Impact factor: 14.919

Review 10.  Progress on In Situ and Operando X-ray Imaging of Solidification Processes.

Authors:  Shyamprasad Karagadde; Chu Lun Alex Leung; Peter D Lee
Journal:  Materials (Basel)       Date:  2021-05-02       Impact factor: 3.623

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