Literature DB >> 35415721

Combining chemistry and protein engineering for new-to-nature biocatalysis.

David C Miller1, Soumitra V Athavale1, Frances H Arnold1.   

Abstract

Biocatalysis, the application of enzymes to solve synthetic problems of human import, has blossomed into a powerful technology for chemical innovation. In the past decade, a threefold partnership, where nature provides blueprints for enzymatic catalysis, chemists introduce innovative activity modes with abiological substrates, and protein engineers develop new tools and algorithms to tune and improve enzymatic function, has unveiled the frontier of new-to-nature enzyme catalysis. In this perspective, we highlight examples of interdisciplinary studies which have helped to expand the scope of biocatalysis, including concepts of enzymatic versatility explored through the lens of biomimicry, to achieve both activities and selectivities that are not currently possible with chemocatalysis. We indicate how modern tools, such as directed evolution, computational protein design and machine learning-based protein engineering methods, have already impacted and will continue to influence enzyme engineering for new abiological transformations. A sustained collaborative effort across disciplines is anticipated to spur further advances in biocatalysis in the coming years.

Entities:  

Year:  2022        PMID: 35415721      PMCID: PMC8995090          DOI: 10.1038/s44160-021-00008-x

Source DB:  PubMed          Journal:  Nat Synth        ISSN: 2731-0582


  47 in total

1.  Computational design of an enzyme catalyst for a stereoselective bimolecular Diels-Alder reaction.

Authors:  Justin B Siegel; Alexandre Zanghellini; Helena M Lovick; Gert Kiss; Abigail R Lambert; Jennifer L St Clair; Jasmine L Gallaher; Donald Hilvert; Michael H Gelb; Barry L Stoddard; Kendall N Houk; Forrest E Michael; David Baker
Journal:  Science       Date:  2010-07-16       Impact factor: 47.728

Review 2.  Expanding the enzyme universe: accessing non-natural reactions by mechanism-guided directed evolution.

Authors:  Hans Renata; Z Jane Wang; Frances H Arnold
Journal:  Angew Chem Int Ed Engl       Date:  2015-02-03       Impact factor: 15.336

Review 3.  Organocatalytic Reactions Enabled by N-Heterocyclic Carbenes.

Authors:  Darrin M Flanigan; Fedor Romanov-Michailidis; Nicholas A White; Tomislav Rovis
Journal:  Chem Rev       Date:  2015-05-20       Impact factor: 60.622

4.  Biocatalytic asymmetric synthesis of chiral amines from ketones applied to sitagliptin manufacture.

Authors:  Christopher K Savile; Jacob M Janey; Emily C Mundorff; Jeffrey C Moore; Sarena Tam; William R Jarvis; Jeffrey C Colbeck; Anke Krebber; Fred J Fleitz; Jos Brands; Paul N Devine; Gjalt W Huisman; Gregory J Hughes
Journal:  Science       Date:  2010-06-17       Impact factor: 47.728

5.  Cell-free chemoenzymatic starch synthesis from carbon dioxide.

Authors:  Tao Cai; Hongbing Sun; Jing Qiao; Leilei Zhu; Fan Zhang; Jie Zhang; Zijing Tang; Xinlei Wei; Jiangang Yang; Qianqian Yuan; Wangyin Wang; Xue Yang; Huanyu Chu; Qian Wang; Chun You; Hongwu Ma; Yuanxia Sun; Yin Li; Can Li; Huifeng Jiang; Qinhong Wang; Yanhe Ma
Journal:  Science       Date:  2021-09-23       Impact factor: 47.728

6.  Enantioselective intramolecular C-H amination catalyzed by engineered cytochrome P450 enzymes in vitro and in vivo.

Authors:  John A McIntosh; Pedro S Coelho; Christopher C Farwell; Z Jane Wang; Jared C Lewis; Tristan R Brown; Frances H Arnold
Journal:  Angew Chem Int Ed Engl       Date:  2013-07-24       Impact factor: 15.336

7.  Navigating the Unnatural Reaction Space: Directed Evolution of Heme Proteins for Selective Carbene and Nitrene Transfer.

Authors:  Yang Yang; Frances H Arnold
Journal:  Acc Chem Res       Date:  2021-01-25       Impact factor: 22.384

8.  Machine learning modeling of family wide enzyme-substrate specificity screens.

Authors:  Samuel Goldman; Ria Das; Kevin K Yang; Connor W Coley
Journal:  PLoS Comput Biol       Date:  2022-02-10       Impact factor: 4.475

9.  Computational design of enone-binding proteins with catalytic activity for the Morita-Baylis-Hillman reaction.

Authors:  Sinisa Bjelic; Lucas G Nivón; Nihan Çelebi-Ölçüm; Gert Kiss; Carolyn F Rosewall; Helena M Lovick; Erica L Ingalls; Jasmine Lynn Gallaher; Jayaraman Seetharaman; Scott Lew; Gaetano Thomas Montelione; John Francis Hunt; Forrest Edwin Michael; K N Houk; David Baker
Journal:  ACS Chem Biol       Date:  2013-01-30       Impact factor: 5.100

10.  Quaternary Charge-Transfer Complex Enables Photoenzymatic Intermolecular Hydroalkylation of Olefins.

Authors:  Claire G Page; Simon J Cooper; Jacob S DeHovitz; Daniel G Oblinsky; Kyle F Biegasiewicz; Alyssa H Antropow; Kurt W Armbrust; J Michael Ellis; Lawrence G Hamann; Evan J Horn; Kevin M Oberg; Gregory D Scholes; Todd K Hyster
Journal:  J Am Chem Soc       Date:  2020-12-28       Impact factor: 15.419

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  4 in total

1.  Engineered P450 Atom-Transfer Radical Cyclases are Bifunctional Biocatalysts: Reaction Mechanism and Origin of Enantioselectivity.

Authors:  Yue Fu; Heyu Chen; Wenzhen Fu; Marc Garcia-Borràs; Yang Yang; Peng Liu
Journal:  J Am Chem Soc       Date:  2022-07-13       Impact factor: 16.383

2.  Energetic Basis and Design of Enzyme Function Demonstrated Using GFP, an Excited-State Enzyme.

Authors:  Chi-Yun Lin; Matthew G Romei; Irimpan I Mathews; Steven G Boxer
Journal:  J Am Chem Soc       Date:  2022-02-24       Impact factor: 16.383

3.  Co-Crystal Structure-Guided Optimization of Dual-Functional Small Molecules for Improving the Peroxygenase Activity of Cytochrome P450BM3.

Authors:  Xiangquan Qin; Yiping Jiang; Jie Chen; Fuquan Yao; Panxia Zhao; Longyi Jin; Zhiqi Cong
Journal:  Int J Mol Sci       Date:  2022-07-18       Impact factor: 6.208

Review 4.  Complexity reduction and opportunities in the design, integration and intensification of biocatalytic processes for metabolite synthesis.

Authors:  Roland Wohlgemuth; Jennifer Littlechild
Journal:  Front Bioeng Biotechnol       Date:  2022-07-22
  4 in total

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