| Literature DB >> 32383339 |
Xiaolei Xie1,2, Weihe Tan2, Fuguang Li2, Eric Carrano1,3, Paola Ramirez1,3, Autumn DiAdamo1, Brittany Grommisch1, Katherine Amato1, Hongyan Chai1, Jiadi Wen1, Peining Li1.
Abstract
BACKGROUND: Follow-up cytogenetic analysis has been recommended for cases with positive noninvasive prenatal screening (NIPS) results. This study of five cases with numerical and structural sex chromosomal abnormalities (SCA) and a review of large case series of NIPS provided guidance to improve prenatal diagnosis for SCA.Entities:
Keywords: chromosome microarray analysis (CMA); fluorescence in situ hybridization (FISH); karyotyping; mosaicism; noninvasive prenatal screening (NIPS); sex chromosome abnormalities (SCA)
Mesh:
Year: 2020 PMID: 32383339 PMCID: PMC7336728 DOI: 10.1002/mgg3.1297
Source DB: PubMed Journal: Mol Genet Genomic Med ISSN: 2324-9269 Impact factor: 2.183
Follow‐up cytogenetic analysis on five cases with positive NIPS results predicting SCA
| Cases | NIPS | Samples | Karyotype | FISH | CMA |
|---|---|---|---|---|---|
| 1 | Loss X | AF | mos 45,X[45]/46,X,idic(Y)(p11.3)[8] | nuc ish(DXZ1x1)[39]/(DXZ1x1,DYZ3x2)[19]/(DXZ1,DYZ3)x1[42] | arr[hg19](X)x1,(Y)x0 ~ 1 |
| 2 | Loss X | CVS | 46,XX | nuc ish(DXZ1x1)[62]/(DXZ1x2)[38] | arr[hg19](X)x1 ~ 2 |
| 3 | Loss X | AF/PB | 46,X,i(X)(q10) |
| arr[hg19] Xp22.33p11.21(481940–57931761)x1,Xq11.1q28(61931689–155235105)x3 |
| 4 | Loss X | CVS | mos 46,X,i(X)(q10)[13]/45,X[7] |
| arr[hg19](X)x1[0.8]/(X)x1,Xq11.1q28(61781601–155208244)x2[0.2] |
| 5 | Presence Y | AF | 46,XX,der(14)t(Y;14)(q12;p13)mat | ish der(14)t(Y;14)(DYZ1+) | arr[hg19]Yq12(59077673–59329950)x1 |
Figure 1A mosaic pattern of monosomy X and isodicentric Y chromosome in Case 1. (a) Chromosome analysis of the culture amniocytes showed typical 45,X (left panel) and 46,X,idic(Y)(p11.3); a triangle points to normal X chromosome and an arrow points to idic(Y)(p11.3) (middle and right panels). (b) Result of FISH test using probes for chromosome 18 (aqua), X (green) and Y (red). The images from left to right showed monosomy X, XY and XYY, respectively. (c) The CMA result showed the loss of X chromosome and the presence of Y chromosome. (d) Result from a quantitative PCR test in duplicate showed positive result for the gene and loci
Figure 2SCA detected in cases 4 and 5. (a) Chromosome analysis on CVS detected an isochromosome of Xq in case 4. (b) CMA result showed a deletion of Xp22.33‐p11.1 and Xq11.1‐q28 with different L2R in case 4. (c) The pedigree showed the transmission of a derivative chromosome 14 from mother to the fetus of case 5. FISH and reversed DAPI images showed DYZ1 signal on the short arm of a derivative chromosome 14 (arrow) and DXZ1 signal on two normal chromosome X (triangles)
The positive rate of NIPS for SCA, follow‐up rate and the PPV for major types of SCA
| Size( | SCA positive( | SCA detection rate (%) | Follow‐up Cytogenetics ( | Rate of Follow‐ up (%) | Cytogenetic TP ( | SCA PPV (%) | The PPV(%) of major SCA Types | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45,X | 47,XXX | 47,XXY | 47,XYY | |||||||||
| McLennan et al. ( | 5,267 | 58 | 1.10% | 48 | 83% | 18 | 38% | 25% | 33% | 55% | 75% | |
| Zhang et al. ( | 10,275 | 57 | 0.55% | 33 | 58% | 18 | 54% | 29% | 100% | 78% | 100% | |
| Kornman et al (2017) | 5,185 | 60 | 1.16% | 49 | 82% | 17 | 35% | 20% | 33% | 50% | 100% | |
| Suo et al. ( | 8,384 | 64 | 0.76% | 64 | 100% | 30 | 47% | 32% | 56% | 60% | 88% | |
| Ramdaney et al. ( | NA | 136 | NA | 64 | 47% | 30 | 47% | 29% | 50% | 69% | 83% | |
| Garshasbi et al. ( | 11,223 | 29 | 0.26% | 29 | 100% | 25 | 86% | 67% | 67% | 80% | 100% | |
| Liang et al. ( | 94,085 | 390 | 0.41% | 390 | 100% | 182 | 47% | 26% | 62% | 83% | 75% | |
| Zheng et al. ( | 8,594 | 44 | 0.51% | 33 | 75% | 18 | 55% | 44% | 58% | 100% | 50% | |
| Zhou et al. ( | 17,894 | 95 | 0.53% | 56 | 59% | 24 | 43% | 23% | 63% | 79% | 33% | |
| Xu et al. ( | 32,931 | 140 | 0.43% | 101 | 72% | 57 | 55% | 26% | 85% | 85% | 69% | |
| Xue et al. ( | 57,204 | 295 | 0.52% | 197 | 67% | 79 | 40% | 21% | 64% | 66% | 77% | |
| Chen et al. ( | 42,910 | 147 | 0.34% | 112 | 76% | 37 | 33% | NA | NA | NA | NA | |
| Xu et al. ( | 31,515 | 225 | 0.71% | 143 | 64% | 61 | 43% | 26% | 65% | 75% | 83% | |
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Bold values indicates the mean and average value calculated from results of these large case series.
Abbreviations: PPV, positive predictive value; SCA, sex chromosome abnormalities; TP, true positive.
The relative frequencies of subtypes of major SCA in prenatal diagnosis
| 45,X | 47,XXX | 47,XXY | 47,XYY | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| 45,X |
mos. X/ XX |
mos. X/ XY | X Rearrang. |
47, XXX | mos. | 47,XXY | mos. | 47,XYY | mos. | |
| Lau et al. ( | 1 | 2 | 4 | 2 | 1 | |||||
| Suo et al. ( | 9 | 1 | 1 | 5 | 6 | 6 | 1 | |||
| Ramdaney et al. ( | 10 | 1 | 1 | 1 | 3 | 11 | 5 | |||
| Xu et al. ( | 6 | 6 | 15 | 2 | 17 | 1 | 11 | 2 | ||
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Abbreviations: mos, mosaicism; Rearrang, Rearrangement; RF, relative frequency.
Figure 3A flowchart showing the performance from NIPS to cytogenetic analysis for evidence‐based genetic counseling and informative decision‐making