Literature DB >> 32377643

Unsupervised Domain Adaptation via Disentangled Representations: Application to Cross-Modality Liver Segmentation.

Junlin Yang1, Nicha C Dvornek2, Fan Zhang3, Julius Chapiro2, MingDe Lin2, James S Duncan1,3,2,4.   

Abstract

A deep learning model trained on some labeled data from a certain source domain generally performs poorly on data from different target domains due to domain shifts. Unsupervised domain adaptation methods address this problem by alleviating the domain shift between the labeled source data and the unlabeled target data. In this work, we achieve cross-modality domain adaptation, i.e. between CT and MRI images, via disentangled representations. Compared to learning a one-to-one mapping as the state-of-art CycleGAN, our model recovers a manyto-many mapping between domains to capture the complex cross-domain relations. It preserves semantic feature-level information by finding a shared content space instead of a direct pixelwise style transfer. Domain adaptation is achieved in two steps. First, images from each domain are embedded into two spaces, a shared domain-invariant content space and a domain-specific style space. Next, the representation in the content space is extracted to perform a task. We validated our method on a cross-modality liver segmentation task, to train a liver segmentation model on CT images that also performs well on MRI. Our method achieved Dice Similarity Coefficient (DSC) of 0.81, outperforming a CycleGAN-based method of 0.72. Moreover, our model achieved good generalization to joint-domain learning, in which unpaired data from different modalities are jointly learned to improve the segmentation performance on each individual modality. Lastly, under a multi-modal target domain with significant diversity, our approach exhibited the potential for diverse image generation and remained effective with DSC of 0.74 on multi-phasic MRI while the CycleGAN-based method performed poorly with a DSC of only 0.52.

Entities:  

Year:  2019        PMID: 32377643      PMCID: PMC7202929          DOI: 10.1007/978-3-030-32245-8_29

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  12 in total

1.  Unified cross-modality feature disentangler for unsupervised multi-domain MRI abdomen organs segmentation.

Authors:  Jue Jiang; Harini Veeraraghavan
Journal:  Med Image Comput Comput Assist Interv       Date:  2020-09-29

2.  Learning to Disentangle Inter-Subject Anatomical Variations in Electrocardiographic Data.

Authors:  Prashnna K Gyawali; Jaideep Vitthal Murkute; Maryam Toloubidokhti; Xiajun Jiang; B Milan Horacek; John L Sapp; Linwei Wang
Journal:  IEEE Trans Biomed Eng       Date:  2022-01-21       Impact factor: 4.538

3.  PSIGAN: Joint Probabilistic Segmentation and Image Distribution Matching for Unpaired Cross-Modality Adaptation-Based MRI Segmentation.

Authors:  Jue Jiang; Yu-Chi Hu; Neelam Tyagi; Andreas Rimner; Nancy Lee; Joseph O Deasy; Sean Berry; Harini Veeraraghavan
Journal:  IEEE Trans Med Imaging       Date:  2020-11-30       Impact factor: 10.048

4.  Multi-site fMRI analysis using privacy-preserving federated learning and domain adaptation: ABIDE results.

Authors:  Xiaoxiao Li; Yufeng Gu; Nicha Dvornek; Lawrence H Staib; Pamela Ventola; James S Duncan
Journal:  Med Image Anal       Date:  2020-07-02       Impact factor: 8.545

5.  Disentangle, Align and Fuse for Multimodal and Semi-Supervised Image Segmentation.

Authors:  Agisilaos Chartsias; Giorgos Papanastasiou; Chengjia Wang; Scott Semple; David E Newby; Rohan Dharmakumar; Sotirios A Tsaftaris
Journal:  IEEE Trans Med Imaging       Date:  2021-03-02       Impact factor: 10.048

6.  Multi-Domain Image Completion for Random Missing Input Data.

Authors:  Liyue Shen; Wentao Zhu; Xiaosong Wang; Lei Xing; John M Pauly; Baris Turkbey; Stephanie Anne Harmon; Thomas Hogue Sanford; Sherif Mehralivand; Peter L Choyke; Bradford J Wood; Daguang Xu
Journal:  IEEE Trans Med Imaging       Date:  2021-04-01       Impact factor: 10.048

7.  Diverse data augmentation for learning image segmentation with cross-modality annotations.

Authors:  Xu Chen; Chunfeng Lian; Li Wang; Hannah Deng; Tianshu Kuang; Steve H Fung; Jaime Gateno; Dinggang Shen; James J Xia; Pew-Thian Yap
Journal:  Med Image Anal       Date:  2021-04-20       Impact factor: 13.828

8.  Bidirectional Mapping-Based Domain Adaptation for Nucleus Detection in Cross-Modality Microscopy Images.

Authors:  Fuyong Xing; Toby C Cornish; Tellen D Bennett; Debashis Ghosh
Journal:  IEEE Trans Med Imaging       Date:  2021-09-30       Impact factor: 11.037

Review 9.  Domain Adaptation for Medical Image Analysis: A Survey.

Authors:  Hao Guan; Mingxia Liu
Journal:  IEEE Trans Biomed Eng       Date:  2022-02-18       Impact factor: 4.756

Review 10.  Advancing Medical Imaging Informatics by Deep Learning-Based Domain Adaptation.

Authors:  Anirudh Choudhary; Li Tong; Yuanda Zhu; May D Wang
Journal:  Yearb Med Inform       Date:  2020-08-21
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