Literature DB >> 32362328

An overview of DNA-encoded libraries: A versatile tool for drug discovery.

Daniel Madsen1, Carlos Azevedo2, Iolanda Micco2, Lars Kolster Petersen2, Nils Jakob Vest Hansen2.   

Abstract

DNA-encoded libraries (DELs) are collections of small molecules covalently attached to amplifiable DNA tags carrying unique information about the structure of each library member. A combinatorial approach is used to construct the libraries with iterative DNA encoding steps, facilitating tracking of the synthetic history of the attached compounds by DNA sequencing. Various screening protocols have been developed which allow protein target binders to be selected out of pools containing up to billions of different small molecules. The versatile methodology has allowed identification of numerous biologically active compounds and is now increasingly being adopted as a tool for lead discovery campaigns and identification of chemical probes. A great focus in recent years has been on developing DNA compatible chemistries that expand the structural diversity of the small molecule library members in DELs. This chapter provides an overview of the challenges and accomplishments in DEL technology, reviewing the technological aspects of producing and screening DELs with a perspective on opportunities, limitations, and future directions.
© 2020 Elsevier B.V. All rights reserved.

Keywords:  Chemical biology; Combinatorial chemistry; DNA compatible chemistry; DNA-encoded chemical library; Drug discovery; Screening; Small molecule discovery

Year:  2020        PMID: 32362328     DOI: 10.1016/bs.pmch.2020.03.001

Source DB:  PubMed          Journal:  Prog Med Chem        ISSN: 0079-6468


  9 in total

1.  The Growing Importance of Chirality in 3D Chemical Space Exploration and Modern Drug Discovery Approaches for Hit-ID: Topical Innovations.

Authors:  Ilaria Proietti Silvestri; Paul J J Colbon
Journal:  ACS Med Chem Lett       Date:  2021-07-16       Impact factor: 4.632

Review 2.  DNA-Encoded Chemical Libraries: A Comprehensive Review with Succesful Stories and Future Challenges.

Authors:  Adrián Gironda-Martínez; Etienne J Donckele; Florent Samain; Dario Neri
Journal:  ACS Pharmacol Transl Sci       Date:  2021-06-14

Review 3.  Strategies for developing DNA-encoded libraries beyond binding assays.

Authors:  Yiran Huang; Yizhou Li; Xiaoyu Li
Journal:  Nat Chem       Date:  2022-02-04       Impact factor: 24.274

4.  Developments in Photoredox-Mediated Alkylation for DNA-Encoded Libraries.

Authors:  Shivani Patel; Shorouk O Badir; Gary A Molander
Journal:  Trends Chem       Date:  2020-12-29

5.  Massively Parallel Optimization of the Linker Domain in Small Molecule Dimers Targeting a Toxic r(CUG) Repeat Expansion.

Authors:  Simon Vezina-Dawod; Alicia J Angelbello; Shruti Choudhary; Kye Won Wang; Ilyas Yildirim; Matthew D Disney
Journal:  ACS Med Chem Lett       Date:  2021-03-02       Impact factor: 4.632

Review 6.  DNA-Encoded Chemistry: Drug Discovery from a Few Good Reactions.

Authors:  Patrick R Fitzgerald; Brian M Paegel
Journal:  Chem Rev       Date:  2020-10-12       Impact factor: 72.087

Review 7.  An overview of kinase downregulators and recent advances in discovery approaches.

Authors:  Beilei Wang; Hong Wu; Chen Hu; Haizhen Wang; Jing Liu; Wenchao Wang; Qingsong Liu
Journal:  Signal Transduct Target Ther       Date:  2021-12-20

Review 8.  DNA-encoded libraries (DELs): a review of on-DNA chemistries and their output.

Authors:  Ying Shi; Yan-Ran Wu; Jian-Qiang Yu; Wan-Nian Zhang; Chun-Lin Zhuang
Journal:  RSC Adv       Date:  2021-01-19       Impact factor: 3.361

9.  Regioselective synthesis of methyl 5-(N-Boc-cycloaminyl)-1,2-oxazole-4-carboxylates as new amino acid-like building blocks.

Authors:  Jolita Bruzgulienė; Greta Račkauskienė; Aurimas Bieliauskas; Vaida Milišiūnaitė; Miglė Dagilienė; Gita Matulevičiūtė; Vytas Martynaitis; Sonata Krikštolaitytė; Frank A Sløk; Algirdas Šačkus
Journal:  Beilstein J Org Chem       Date:  2022-01-12       Impact factor: 2.883

  9 in total

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