| Literature DB >> 32354368 |
Rachel Craik1,2, Donna Russell3, Rachel M Tribe4, Lucilla Poston4, Geoffrey Omuse5, Patricia Okiro5, David Chege5, Mathurin Diatta6, Abdul Karim Sesay6, Inocencia Cuamba7, Carla Carrilho8,9, Esperança Sevene7,9, Meriel Flint-O'Kane4,10, Peter von Dadelszen4.
Abstract
BACKGROUND ANDEntities:
Keywords: Biological specimens; Biorepository; Hypertension; PRECISE; Pre-eclampsia; Pregnancy; Preterm birth
Mesh:
Year: 2020 PMID: 32354368 PMCID: PMC7191687 DOI: 10.1186/s12978-020-0874-7
Source DB: PubMed Journal: Reprod Health ISSN: 1742-4755 Impact factor: 3.223
Recruitment by country and cohort
| Country | Facility | Non-pregnant women of reproductive age | Unselected Pregnant Women | Pregnant Women Presenting with Complications | Total Women Recruited |
|---|---|---|---|---|---|
| The Gambia: | |||||
| Farafenni | District Hospital | 600 | 2000 | 300 | 2900 |
| Illiasa, | Rural PHC | ||||
| Ngayen Sanjal | Rural PHC | ||||
| Kenya: | |||||
| Mariakani | Subcounty Hospital | 600 | 4000 | 600 | 5200 |
| Rabai | Rural Health Centre | ||||
| Mozambique: | |||||
| Manhica | Tertiary Referral Centre | 600 | 4000 | 600 | 5200 |
| Xinavane | Rural Hospital | ||||
| Total | 1800 | 10,000 | 1500 | 13,300 | |
Quality Measures for sample RNA, DNA and histology. RIN (RNA Integrity Number), DIN (DNA Integrity Number), H&E haematoxylin- and eosin-staining, IHC Immuno-histochemistry
| Specimen type | Primary | Secondary |
|---|---|---|
| RNA | RIN value ≥7.0 | 260/280 ratio: 1.9–2.1 |
| DNA | DIN value ≥7.0 | 260/280 ratio: 1.7–1.9 |
| Placenta | RIN value ≥7.0 | RNA Extraction 260/280 ratio |
| Placenta Histology | H&E | IHC Markers e.g. vimentin |
Overview of type of biological samples & the collection schedule
| Time of sample collection | Type of biological sample |
|---|---|
| PRECISE visit 1 | Maternal blood, urine, mid-vaginal swabs |
| PRECISE visit 2 (≥28+ 0 weeks) | Maternal blood and urine |
| Intrapartum (at the onset of labour) | Maternal mid-vaginal swab |
| Delivery | Umbilical cord blood, placenta and cord tissue, placental membranes |
| Within 48 h post-partum | Newborn heel prick only if cord blood is not collected (only The Gambia and Mozambique), maternal blood and urine. |
| Post-partum visit (6 weeks after delivery) | Neonatal stool sample, maternal blood and urine. Neonatal heel prick (if required, Kenya only) |
Summary of sample types collected in PRECISE
| Sample type | Collection tube | Aliquots | Storage |
|---|---|---|---|
| Blood | EDTA | Blood spot | Room temperature |
| EDTA | Whole blood | −80 °C | |
| EDTA | Buffy coat | −80 °C | |
| EDTA | Plasma | −80 °C | |
| Serum | Serum | −80 °C | |
| Urine | no treatment | Urine | −80 °C |
| Urine sediment | −80 °C | ||
| Vaginal swab | Copan eSwab | TE buffer | −80 °C |
| Dacron swab | Protease inhibitor | −80 °C | |
| Placenta, fetal membranes and cord | No treatment | Peripheral biopsies | Snap frozen |
| Central biopsies | Snap frozen | ||
| Peripheral biopsies | Paraffin embedding | ||
| Central biopsies | Paraffin embedding | ||
| Cord tissue | Snap frozen | ||
| Cord tissue | Paraffin embedding | ||
| Membrane | Paraffin embedding | ||
| Heel prick | No treatment | Blood spot | Room temperature |
| Neonatal stool | DNA/RNA Shield tube | Swab | −80 °C |
Fig. 1Placenta processing protocol – the figure illustrates where the samples from the placenta tissue, membranes and cord are collected
| Members | |
|---|---|
| In-country teams | |
| THE GAMBIA: Medical Research Council Unit The Gambia at the London School of Hygiene and Tropical Medicine, Fajara | Umberto D’Alessandro, Anna Roca, Hawanatu Jah, Ofordile Oguchukwu, Andrew Prentice, Melisa Martinez-Alvarez, Brahima Diallo, Adbul Sesey, Kodou Lette, Alpha Bah, Chilel Sanyang |
| KENYA: Aga Khan University, Nairobi | Marleen Temmerman, Angela Koech Etyang, Peris Musitia, Mary Amondi, David Chege, Patricia Okiro, Geoffrey Omuse, Sikolia Wanyonyi |
| MOZAMBIQUE: Centro de Investigação em Saúde de Manhiça, Manhiça | Esperança Sevene, Paulo Chin, Corssino Tchavana, Salesio Macuacua, Anifa Vala, Helena Boene, Lazaro Quimice, Sonia Maculuve, Eusebio Macete, Inacio Mandomando, Carla Carillho |
| Central co-ordinating team | |
| Department of Women and Children’s Health, School of Life Course Sciences, Faculty of Life Sciences and Medicine, King’s College London | Peter von Dadelszen, Laura A. Magee, Meriel Flint-O’Kane, Rachel Craik, Amber Strang, Marina Daniele |
| Donna Russell Consulting | Donna Russell |
| Co-Investigator team | |
| Midlands State University, Zimbabwe | Prestige Tatenda Makanga, Liberty Makacha, Yolisa Dube, Newton Nyapwere |
| Kings College London | Lucilla Poston, Jane Sandall, Rachel Tribe, Andrew Shennan, Sophie Moore, Tatiana Salisbury, Ben Barratt, Lucy Chappell, Sean Beevers, Kate Bramham |
| University of Oxford | Aris Papageorgiou, Alison Noble |
| London School of Hygiene and Tropical Medicine | Hannah Blencowe, Veronique Filippi, Joy Lawn, Matt Silver, Matthew Chico |
| St George’s, University of London | Judith Cartwright, Guy Whitley, Sanjeev Krishna |
| University of British Columbia | Marianne Vidler, Jing (Larry) Li, Jeff Bone, Mai-Lei (Maggie) Woo Kinshella, Beth A. Payne, Domena Tu, Warancha Tumtaweetikul |
| University of Malawi | William Stones |