Literature DB >> 24424103

The procurement, storage, and quality assurance of frozen blood and tissue biospecimens in pathology, biorepository, and biobank settings.

Maryam Shabihkhani1, Gregory M Lucey2, Bowen Wei3, Sergey Mareninov4, Jerry J Lou5, Harry V Vinters6, Elyse J Singer7, Timothy F Cloughesy8, William H Yong9.   

Abstract

Well preserved frozen biospecimens are ideal for evaluating the genome, transcriptome, and proteome. While papers reviewing individual aspects of frozen biospecimens are available, we present a current overview of experimental data regarding procurement, storage, and quality assurance that can inform the handling of frozen biospecimens. Frozen biospecimen degradation can be influenced by factors independent of the collection methodology including tissue type, premortem agonal changes, and warm ischemia time during surgery. Rapid stabilization of tissues by snap freezing immediately can mitigate artifactually altered gene expression and, less appreciated, protein phosphorylation profiles. Collection protocols may be adjusted for specific tissue types as cellular ischemia tolerance varies widely. If data is not available for a particular tissue type, a practical goal is snap freezing within 20min. Tolerance for freeze-thaw events is also tissue type dependent. Tissue storage at -80°C can preserve DNA and protein for years but RNA can show degradation at 5years. For -80°C freezers, aliquots frozen in RNAlater or similar RNA stabilizing solutions are a consideration. It remains unresolved as to whether storage at -150°C provides significant advantages relative to that at -80°C. Histologic quality assurance of tissue biospecimens is typically performed at the time of surgery but should also be conducted on the aliquot to be distributed because of tissue heterogeneity. Biobanking protocols for blood and its components are highly dependent on intended use and multiple collection tube types may be needed. Additional quality assurance testing should be dictated by the anticipated downstream applications.
Copyright © 2014 The Canadian Society of Clinical Chemists. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Biobank; Biorepository; Biospecimen; Frozen; Procurement; Tissue

Mesh:

Year:  2014        PMID: 24424103      PMCID: PMC3982909          DOI: 10.1016/j.clinbiochem.2014.01.002

Source DB:  PubMed          Journal:  Clin Biochem        ISSN: 0009-9120            Impact factor:   3.281


  92 in total

1.  Tissue procurement strategies affect the protein biochemistry of human heart samples.

Authors:  Lori A Walker; Allen M Medway; John S Walker; Joseph C Cleveland; Peter M Buttrick
Journal:  J Muscle Res Cell Motil       Date:  2010-12-24       Impact factor: 2.698

Review 2.  Frozen tissue biobanks. Tissue handling, cryopreservation, extraction, and use for proteomic analysis.

Authors:  Christer Ericsson; Bo Franzén; Monica Nistér
Journal:  Acta Oncol       Date:  2006       Impact factor: 4.089

3.  Impact of thawing on RNA integrity and gene expression analysis in fresh frozen tissue.

Authors:  Johan Botling; Karolina Edlund; Ulrika Segersten; Simin Tahmasebpoor; Mats Engström; Magnus Sundström; Per-Uno Malmström; Patrick Micke
Journal:  Diagn Mol Pathol       Date:  2009-03

Review 4.  Organizational issues in providing high-quality human tissues and clinical information for the support of biomedical research.

Authors:  Walter C Bell; Katherine C Sexton; William E Grizzle
Journal:  Methods Mol Biol       Date:  2010

5.  Influence of pre-analytical variables on VEGF gene expression and circulating protein concentrations.

Authors:  Mohsen Azimi-Nezhad; Daniel Lambert; Catherine Ottone; Corinne Perrin; Celine Chapel; Gwenaëlle Gaillard; Michèle Pfister; Christine Masson; Eric Tabone; Fay Betsou; David Meyronet; Marie-Noëlle Ungeheuer; Sophie Visvikis Siest
Journal:  Biopreserv Biobank       Date:  2012-10       Impact factor: 2.300

6.  Biological stability of mRNA isolated from human postmortem brain collections.

Authors:  S Leonard; J Logel; D Luthman; M Casanova; D Kirch; R Freedman
Journal:  Biol Psychiatry       Date:  1993-03-15       Impact factor: 13.382

7.  Do-It-Yourself device for recovery of cryopreserved samples accidentally dropped into cryogenic storage tanks.

Authors:  Rohini Mehta; Ancha Baranova; Aybike Birerdinc
Journal:  J Vis Exp       Date:  2012-05-11       Impact factor: 1.355

8.  Banking of fresh-frozen prostate tissue: methods, validation and use.

Authors:  A C P Riddick; C Barker; I Sheriffs; R Bass; V Ellis; K K Sethia; D R Edwards; R Y Ball
Journal:  BJU Int       Date:  2003-03       Impact factor: 5.588

9.  RNA integrity in post mortem human variant Creutzfeldt-Jakob disease (vCJD) and control brain tissue.

Authors:  K R Sherwood; M W Head; R Walker; C Smith; J W Ironside; J K Fazakerley
Journal:  Neuropathol Appl Neurobiol       Date:  2011-10       Impact factor: 8.090

10.  A new approach for detecting low-level mutations in next-generation sequence data.

Authors:  Mingkun Li; Mark Stoneking
Journal:  Genome Biol       Date:  2012-05-23       Impact factor: 13.583

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  60 in total

Review 1.  Orientation and Training of New Biobank Personnel.

Authors:  Ryan R Williams; Diviya Gupta; William H Yong
Journal:  Methods Mol Biol       Date:  2019

Review 2.  Procurement, Storage, and Use of Blood in Biobanks.

Authors:  Jaclyn N Perry; Afreen Jasim; Amin Hojat; William H Yong
Journal:  Methods Mol Biol       Date:  2019

Review 3.  Procurement and Storage of Surgical Biospecimens.

Authors:  Amin Hojat; Bowen Wei; Madeline G Olson; Qinwen Mao; William H Yong
Journal:  Methods Mol Biol       Date:  2019

Review 4.  An Introduction to Starting a Biobank.

Authors:  Mitra D Harati; Ryan R Williams; Masoud Movassaghi; Amin Hojat; Gregory M Lucey; William H Yong
Journal:  Methods Mol Biol       Date:  2019

5.  Real-Time Temperature Mapping in Ultra-Low Freezers as a Standard Quality Assessment.

Authors:  Samantha Powell; Alfredo Molinolo; Edgar Masmila; Sharmeela Kaushal
Journal:  Biopreserv Biobank       Date:  2019-03-26       Impact factor: 2.300

6.  Impact of post-collection freezing delay on the reliability of serum metabolomics in samples reflecting the California mid-term pregnancy biobank.

Authors:  Michael R La Frano; Suzan L Carmichael; Chen Ma; Macy Hardley; Tong Shen; Ron Wong; Lorenzo Rosales; Kamil Borkowski; Theresa L Pedersen; Gary M Shaw; David K Stevenson; Oliver Fiehn; John W Newman
Journal:  Metabolomics       Date:  2018-11-15       Impact factor: 4.290

7.  Characterization of RNA isolated from eighteen different human tissues: results from a rapid human autopsy program.

Authors:  Douglas G Walker; Alexis M Whetzel; Geidy Serrano; Lucia I Sue; Lih-Fen Lue; Thomas G Beach
Journal:  Cell Tissue Bank       Date:  2016-04-16       Impact factor: 1.522

Review 8.  Proceedings of the 1st Puerto Rico Biobanking Workshop.

Authors:  Edna Mora; James A Robb; Gustavo Stefanoff; Robert Hunter Mellado; Domenico Coppola; Teresita Muñoz-Antonia; Idhaliz Flores
Journal:  Rev Recent Clin Trials       Date:  2014

Review 9.  A critical analysis of cancer biobank practices in relation to biospecimen quality.

Authors:  Amanda Rush; Kevin Spring; Jennifer A Byrne
Journal:  Biophys Rev       Date:  2015-10-22

Review 10.  Blood-borne biomarkers and bioindicators for linking exposure to health effects in environmental health science.

Authors:  M Ariel Geer Wallace; Tzipporah M Kormos; Joachim D Pleil
Journal:  J Toxicol Environ Health B Crit Rev       Date:  2016-10-19       Impact factor: 6.393

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