Ajay Vikram Singh1,2, Vimal Kishore1, Giulia Santomauro3, Oncay Yasa1, Joachim Bill3, Metin Sitti1,4. 1. Physical Intelligence Department, Max Planck Institute for Intelligent Systems, 70569 Stuttgart, Germany. 2. Department of Chemical and Product Safety, German Federal Institute for Risk Assessment, 10589 Berlin, Germany. 3. Department for Bioinspired Materials, Institute for Materials Science, University of Stuttgart, 70569 Stuttgart, Germany. 4. School of Medicine and School of Engineering, Koç University, 34450 Istanbul, Turkey.
Abstract
Active self-propelled colloidal populations induce time-dependent three-dimensional fluid flows, which alter the rheological (viscoelastic) properties of their fluidic media. Researchers have also studied passive colloids mixed with bacterial suspensions to understand the hydrodynamic coupling between active and passive colloids. With recent developments in biological cell-driven biohybrid microswimmers, different type biological microswimmer (e.g., bacteria and algae) populations need to interact fluidically with each other in the same fluidic media, while such interactions have not been studied experimentally yet. Therefore, we report the swimming behavior of two opposite types of biological microswimmer (active colloid) populations: Chlamydomonas reinhardtii (C. reinhardtii) algae (puller-type microswimmers) population in coculture with Escherichia coli (E. coli) bacteria (pusher-type microswimmers) population. We observed noticeable fluidic coupling deviations from the existing understanding of passive colloids mixed with bacterial suspensions previously studied in the literature. The fluidic coupling among puller- and pusher-type microswimmers led to nonequilibrium fluctuations in the fluid flow due to their opposite swimming patterns. Such coupling could be the main reason behind the shift in motility behaviors of these two opposite-type swimmer populations suspended in the same fluidic media.
Active self-propelled colloidal populations induce time-dependent three-dimensional fluid flows, which alter the rheological (viscoelastic) properties of their fluidic media. Researchers have also studied passive colloids mixed with bacterial suspensions to understand the hydrodynamic coupling between active and passive colloids. With recent developments in biological cell-driven biohybrid microswimmers, different type biological microswimmer (e.g., bacteria and algae) populations need to interact fluidically with each other in the same fluidic media, while such interactions have not been studied experimentally yet. Therefore, we report the swimming behavior of two opposite types of biological microswimmer (active colloid) populations: Chlamydomonas reinhardtii (C. reinhardtii) algae (puller-type microswimmers) population in coculture with Escherichia coli (E. coli) bacteria (pusher-type microswimmers) population. We observed noticeable fluidic coupling deviations from the existing understanding of passive colloids mixed with bacterial suspensions previously studied in the literature. The fluidic coupling among puller- and pusher-type microswimmers led to nonequilibrium fluctuations in the fluid flow due to their opposite swimming patterns. Such coupling could be the main reason behind the shift in motility behaviors of these two opposite-type swimmer populations suspended in the same fluidic media.
Recently,
bacteria-driven[1−6] (pusher-type) and algae-driven[7,8] (puller-type) biohybrid
microswimmers have been proposed to be used in potentially high-impact
environmental remediation, lab-on-a-chip, and active in vivo targeted drug delivery applications.[9−12] On the other hand, researchers
have mixed passive colloids with bacterial suspensions to study the
hydrodynamic coupling between active and passive colloidal particles.[13] These experiments showed noticeable deviations
from the existing understanding of active colloids. The nonequilibrium
fluctuations in the fluid flow due to the swimming patterns of bacteria
are considered to be the main reason behind the emergence of collective
motion in passive colloids suspended in the active bacterial culture
media.[14−16] However, in the natural ecological niches and future
potential medical and environmental remediation application scenarios,
opposite-type bacteria- and algae-driven biohybrid microswimmer populations
need to interact with each other. For example, bacteria and microalgae
populations can interact and exist together in their complex natural
habitat. Such complex interactions can develop spontaneous fluidic
flows in the absence of imposed gradients by using the energy supplied
by the active microswimmers.[8] The instability
of an isotropic suspension of active microswimmers involves the coupling
of swimmer orientation, fluidic flow, and swimming-induced stresses.[13] There is no study yet describing how these opposite-type
microswimmers would hydrodynamically couple if they coexist in the
same fluidic media.In this report, we present an in
vitro model to investigate whether there is any hydrodynamic
interaction between the active pusher- and puller-type microswimmers
(colloids) suspended in the same fluidic media. This will enable us
to understand how such opposite-type active microswimmers maintain
their dynamic interactions with their neighbors while simultaneously
defending their hydrodynamic territory to perform functional tasks,
such as reproduction, biofilm formation, and colonization. We hypothesize
that the dynamic viscosity of one of the growing active colloid population
(e.g., E. coli) may influence
the onset of long-range velocity correlations of the other population
(e.g., C. reinhardtii). The occurrence
of such long-range fluid velocity correlations at different bacterial
concentrations can be determined if such correlations are measured
in the same coculture of pusher- and puller-type microswimmer populations.
It is conceivable that the details of bacterial sensing and motility
can be mapped to various future potential biohybrid microswimmer applications.
Moreover, we postulate that the dynamics of density increase in one
population, while keeping the other one constant, might influence
the motility and directionality of the other population in the close
vicinity. In this context, we investigated how hydrodynamic coupling
between E. coli and C. reinhardtii populations influences the motion
of the C. reinhardtii by tracking
their three-dimensional (3D) swimming in a mixed fluidic medium.
Materials and Methods
Mixed Culture of Prokaryotic
and Eukaryotic Cells
The experiments were conducted with
living C. reinhardtii (strain
11-32), obtained from the culture collection of algae at Göttingen
University (SAG), Germany. The microalgae were cultivated in BG-11
medium at room temperature and under a 12:12 light–dark cycle
(Philips Master TL-D 58W/840 Super 80 Weiss) in 250 mL Erlenmeyer
flasks, sealed with a permeable membrane to prevent contamination
but allow ventilation. All cultures including the references were
adjusted to pH 4.8 every day as previously described.[17] Initially, all cultures had populations of about 5.5 ×
105 cells/mL. On the first, third, and seventh days of
the cultures, the number of cells was counted with a hemocytometer
(Marienfeld, Lauda-Königshofen) to investigate the development
of the cultures.The bacterial strain was grown overnight at
37 °C in lysogeny broth (LB) medium. The inoculum for microswimmer
assays was prepared from actively growing organisms (logarithmic phase).
The concentration of bacteria suspension was determined by measuring
their optical density at 600 nm (OD600). The effect of
microalgae mixed culture on bacterial growth kinetics was investigated
by measuring OD600 with a spectrophotometer (Synergy HTX,
Biotek, Germany). For growth kinetic study, E. coli strains were cultured in LB medium and incubated at 37 °C on
an orbital shaker (Gyromax, Amerex Instruments, Inc., Germany) at
a rotation speed of 200 rpm for ∼6 h. Then, the bacterial suspension
was diluted with the fresh medium until it corresponded to an OD600 of 0.1. 50 μL of the bacterial suspension (initial
concentration of 105–106 CFU mL–1) was then added to each well of a microliter plate (Eppendorf, VWR,
Germany) along with phosphate-buffered saline (PBS) (20 μL)
as control. 50 μL of microalgae suspension was then added to
respective wells and again incubated at 37 °C on the orbital
shaker at a rotation speed of 200 rpm. The bacterial viability was
monitored at regular intervals by taking absorbance at 600 nm. All
studies were done in triplicates.
Evaluation of the Steering
Properties of the Mixed C. reinhardtii and E. coli Populations
By keeping C. reinhardtii (puller-type
microswimmer) density constant, we varied E. coli (pusher-type microswimmer) density in a high throughput manner using
an 8-well microchamber (Micro-Slide, ibidi, Germany) and recorded
time-lapse videos for 9 h. C. reinhardtii can be effectively tracked in 3D because of their intrinsic autofluorescence
properties, with live imaging to extract various quantitative information.
The 3D trajectories were generated by using a Nikon NIS 3D object
tracking module. The motions of the mixed microswimmer populations
were examined inside a custom-made microscope chamber slide harboring
8 wells (bottom thickness = 150 μm) for high-throughput analysis.
The microscopy investigation was performed with a Zeiss Axio Observer
A1 inverted microscope with an Axiocam 503 CCD camera and a 40×
(numerical aperture = 0.6) objective lens. The microalgae and bacteria
cocultures were illuminated by using a red filter with an emission
peak at 655 nm, and a bandwidth of 15 nm (655/15 BrightLine HC, AHF
Analysentechnik, Tübingen, Germany), to prevent phototactic
biased motion of the microalgae and thus to avoid false-positive results.[15]
Viscosity Measurements to Determine Microrheology
The microrheology measurements of E. coli–C. reinhardtii suspensions
were performed by using a precise computer-controlled viscometer (Hybrid
Rheometer HR 10, TA Instruments, Germany) with a 40 mm titanium-coated
parallel plate (titanium has higher sensitivity than a steel plate).
This enabled us to quantify the storage (elastic) and loss (viscous)
moduli as G′ and G″
components, respectively. The microrheological measurements on a mixed
culture of microalgae and bacteria are technically tricky since the
plate gap shall not exceed the size of a single cell (in this case
∼3–5 μm) and the area of measurement shall not
be more than 15 cm2 since these cells are very soft and
enable the rheometer to resolve the torques. To make the plates parallel,
special polished glass plates, coated with a thin titanium layer (∼5
nm) and a root-mean-square surface roughness of 250 nm, were used
in a modular compact rheometer from Anton-Paar GmbH (Berlin, Germany).
Titanium coating exhibits higher sensitivity (∼nN range) compared
with the conventional steel plates (∼μN range). Also,
the surface roughness further improves the measurements by enhancing
the surface stickiness of the cell mixture between the plates to eliminate
the slip flow between the adjacent plates. 200 μL of unmixed/mixed
culture suspensions with a high cell density (∼106 cells in each) was used for the microrheology experiments. After
fixing the dry and clean top plate with a gap of ∼250 μm
with the bottom plate, we carefully positioned the cell suspension
in between the plate space using a micropipet. The capillary forces
allow us to fill the gap between the top and bottom plate with the
cell suspensions. Subsequently, a step shear strain of about 10% was
applied for harmonic oscillation experiments to record the frequency
and amplitude sweeps.
Viability of C. reinhardtii Incubated with E. coli
The sample from the incubator (Professional 3500, VWR, Germany) was
stained by using 10 μM SYTOX Green (Molecular Probes, USA) in
TAP media for 10 min at room temperature. Live cells in the sample
were observed at 488 nm (Ar laser)/505–530 nm (excitation/emission)
and dead cells were observed at 543 nm (HeNe laser)/560 nm (excitation/emission)
by using a confocal laser microscope (LSM 510 META, Carl Zeiss, Germany).
The ZEN 2009 Light Edition software (Carl Zeiss, Germany) was used
to merge dual fluorescence images. About 500 cells in a random field
at 100× magnification were utilized to calculate the viability
of C. reinhardtii.
Time-Lapse
Video Microscopy and Optical Flow Measurement
The dishes
(ibidi, Germany) were placed on TCS-SP2 AOBS (Leica) at 60× with
proper phase contrast filters and equipped with an incubation chamber
(H301-EC-BL, Okolab) to keep the cells at 37 °C. Just before
recording time-lapse videos, we observed freshly harvested C. reinhardtii at low (1 × 105 cells/mL), medium (5 × 105 cells/mL), and high (1
× 106 cells/mL) concentrations on the inverted optical
microscope for routine motility and swimming characterizations. Movies
were recorded close to the bottom of the focal plane in a range of
∼1–5 μm culture dish and then 50 μm away
from the bottom to observe whether the two opposite microswimmers
were performing 3D motion by moving in and out of the focal plane.
Bright-field phase-contrast images were collected every 5 min overnight
by a CoolSNAP HQ2 CCD camera (Photometrics, Tucson, AZ),
connected to the Nikon Eclipse Ti confocal microscope with a Yokogawa
CSU-W1 spinning disk. Observed areas were randomly chosen for the
time-lapse acquisitions from the entire population.Particle
image velocimetry (PIV) analyses were performed by using the ImageJ[18,19] plugin[20] to characterize the fluid flows
created by the microswimmers. In brief, a pair of images were divided
into smaller regions (cross-correlation interrogation windows). The
cross-correlation between these image subregions measured the optic
flow (displacement or velocity of the microalgae) within the assigned
image pair. By progressively decreasing the interrogation window size
as 128 × 64 × 32 (in pixels), we obtained a better PIV resolution.
The template matching with the normalized correlation coefficient
algorithm was implemented for the image processing, where the interrogation
windows were compared initially against a larger search window. The
results of the PIV analysis were displayed as a vector plot and saved
in plain text tabular format containing all the analysis results as
.txt extension. The PIV ImageJ plugin is used for the visualization
of the vector and the magnitude data from PIV analysis.
Statistical
Analysis
The experiments were performed in triplicates. The
results were expressed as the mean and the standard deviation of the
values that were obtained from at least three independent experiments.
Differences in the mean values between control experiments (without
mixed culture) and bacteria/microalgae/tracer beads treated mixed
culture experiments were analyzed by Student’s t test using GraphPad Prism 5 software. The significance level was
set to 0.05 (p < 0.05) for all statistical analyses.
Results and Discussion
Biological microswimmers are active
micrometer-scale colloids that self-propel by moving their flagella
or cilia using chemical energy (ATP). According to the type of far-field
fluid flow that they induce, they are classified as pushers and pullers.
While pushers force fluid outward along their swimming direction and
draw fluid into the sides of their bodies, pullers force the fluid
inward along their swimming direction and repel fluid from their sides.
Such opposite fluidic force dipoles have important consequences for
the fluidic interactions among the microswimmers. To understand the
hydrodynamic coupling between two opposite-type microswimmer populations,
we mixed bacteria and microalgae in their natural culture and motility
media and studied their hydrodynamic interactions in detail (Figure a).
Figure 1
(a) Schematics showing
experimental procedure
with diverse two opposite-type microswimmer population mixture characteristics.
(b) Increase in mean speed of microalgae as a function of coculture
incubation time. A constant-density C. reinhardtii motion was investigated against three different E. coli densities (d = initial density at each time point).
Error bars show mean value ± standard deviation (SD) from three
different experiments.
(a) Schematics showing
experimental procedure
with diverse two opposite-type microswimmer population mixture characteristics.
(b) Increase in mean speed of microalgae as a function of coculture
incubation time. A constant-density C. reinhardtii motion was investigated against three different E. coli densities (d = initial density at each time point).
Error bars show mean value ± standard deviation (SD) from three
different experiments.The mean
speed of algae is plotted in Figure b as a function of incubation time for three different
initial densities of bacteria (the density of bacteria itself is a
function of coculture incubation time). As observed, the mean speed
of C. reinhardtii (pullers) increased
with the increasing density of E. coli (pushers), while C. reinhardtii density remained constant up to 6 h of mixed culture incubation.
Subsequently, we observed a decrease in the mean speeds, which might
arise due to the preparation and onset of microalgae division and
arrests in motilities.[21] The doubling time
of C. reinhardtii is 7–8
h, whereas it is 45–60 min for E. coli. Therefore, we assume that microalgae density remained constant
during the experiment. The imaging was completed within this time
period. The increase in the population size of E. coli hindered their own mean speed via mechanical coupling among themselves.
We hypothesize that the hydrodynamic coupling, based upon diverse
swimming patterns of pushers and pullers, may not be as strong as
the mechanical coupling mainly due to their size differences (E. coli ∼1–3 μm and C. reinhardtii ∼7–10 μm
in diameter) and their motion confinements in two-dimensional (2D)
and 3D space, respectively.The mechanical coupling refers to
coupling arising between microswimmers and extracellular polymeric
substances, and the hydrodynamic coupling refers to fluid coupling
arising due to the collective swimming of microalgae and bacteria.[22] As qualitatively shown in Movie S1, after tracking autofluorescent C. reinhardtii (chlorophyll-bearing algae), it exhibited 3D swimming patterns as
evident from the changes in directions at differential time points
compared to E. coli (stained with
SYTO 9 dye), which largely swim in the 2D plane. Therefore, the mechanical
coupling may play an important role in swimming speed changes of the
opposite-type microswimmers in a mixed culture. We would also like
to mention that possibilities of other kinds of couplings, like chemical
or any other kind of signaling, cannot be ruled out in the presented
experimental study. It is very difficult to prove their presence or
absence by using the current techniques. The focus of this work is
to understand the complex interplay of the hydrodynamic and the mechanical
coupling between two opposite-type active microswimmers.When
we traced E. coli and C. reinhardtii separately, we found that the
mean speed of microalgae increases in the presence of bacteria; however,
the mean speed of bacteria decreases as shown in Table . At early time points, the
mixed algae–bacteria coculture chamber with the highest density
demonstrated the highest mean speeds. As time advanced, E. coli grew in the chamber (E. coli vs C. reinhardtii doubling time ∼1 to ∼8 h), and thus, bacterial density
increased. Up to a certain density, the mean speed of the microalgae
increased, but close to 7–9 h, the speed further decreased
irrespective of the cell density.
Table 1
Mean Speeds (in μm/s)
of Microalgae, Bacteria,
and Their Cocultures Measured for Initial Cell Density of d = 1 × 106 Cells/mL
microalgae
microalgae–bacteria mixture
bacteria
microalgae
41.3 ± 5.4
53.0 ± 4.9
bacteria
24.1 ± 2.2
29.0 ± 1.7
This result
could be
due to the following reasons: we observed that when C. reinhardtii and E. coli cells were mixed together, bacterial cells preferably stayed at
the bottom of the vessel (Figure S1a,b)
irrespective of their prior mixing before adding to the microscopic
imaging dish. Nevertheless, we performed movie recordings close to
the bottom wall because there we observed a significant amount of
moving C. reinhardtii for the
analyses, whereas going away from the bottom we saw fewer moving cells
due to preferable 2D motion of the E. coli.In these conditions,
we believe that bacterial cells found at the bottom acted as a carpet
adding to an enhanced diffusion culture medium near the carpet of
swimming E. coli.[1] Therefore, moving fluid with a bacterial carpet enhanced
the C. reinhardtii mean swimming
speed. Furthermore, E. coli created
the local force on the surrounding medium away from the swimming directions
(Figure a), which
might add to hydrodynamic-enhanced flow to .[23]To understand increase (microalgae) versus decrease
(bacteria) in swimming mean speeds, we examined relevant parameters
such as viscosity variation, dynamic cluster formation, activity/motility
induced phase separation, and individual flow fields of the microswimmers.
We noticed that the E. coli– suspension with the highest initial bacterial density (Figure b) showed a maximum
increase in microalgae mean speed. It is usually assumed that E. coli in dilute suspensions largely exhibits
hydrodynamic coupling and less mechanical coupling. The mechanical
coupling, however, evolves and starts dominating hydrodynamic coupling
with the increasing cell population and contributes to long-range
correlated motion.[22] This could indirectly
lead to an increase in diffusion and hence an increase in mean speed.
We believe that in such a complex suspension of microswimmers with
the opposite flow fields (pushers versus pullers in Figure a) extracellular polymer materials
and bacterial debris act as matrices for the mechanical coupling.
This leads to large-scale collective oscillation in C. reinhardtii in dense bacterial suspensions
and counterintuitive weak synchronization among E. coli(24) (Movie S2).The diffusion coefficient and mean speed measurements showed
the
active interaction between C. reinhardtii and E. coli, which increases
the mean speed of the microalgae. To validate that the observed results
were due to active swimming dynamics, we added passive polystyrene
tracer beads, which have a similar size of microalgae, into the suspensions.
We did not notice an equivalent diffusion and mean speed enhancement
or changes in diffusion of tracer beads (Figure ), indicating the active nature of the interaction.
Upon mixing the tracer beads with the two opposite-type active microswimmers
together, demonstrated significantly high mean speeds (t = 0.045, p ≤ 0.05), followed by E. coli and tracer beads. Irrespective of the
cell density, when C. reinhardtii was mixed with E. coli and tracer
beads separately, we saw maximum mean speed increase only when microalgae
were mixed with bacteria. It gives a strong indication of complex
mechanical coupling between puller- and pusher-type microswimmers
(Figure S3).
Figure 2
(a, b) Diffusion coefficient
alterations in a bacteria–algae–beads
mixed cocultures (a) and individual microswimmers (b). (c) High-density
coculture of active microswimmers: (i) microalgae, (ii) bacteria,
(iii) tracer beads, and (iv) overlay of microalgae, bacteria, and
beads. Scale bar is 20 μm.
(a, b) Diffusion coefficient
alterations in a bacteria–algae–beads
mixed cocultures (a) and individual microswimmers (b). (c) High-density
coculture of active microswimmers: (i) microalgae, (ii) bacteria,
(iii) tracer beads, and (iv) overlay of microalgae, bacteria, and
beads. Scale bar is 20 μm.Figure c(i–iv)
demonstrates fluorescent images
of individual cultures of C. reinhardtii, E. coli, and tracer beads with
their overlay (from left to right, respectively). Figure S2 demonstrates low, medium, and high density of C. reinhardtii, E. coli, tracer beads, and their overlay fluorescent images.In the
real scenario of microswimmer hydrodynamic coupling,
the complex interplay among the passive viscoelastic biomaterial properties
(swimmer cells), the fluidic stresses, and the internal micro/nanomotor
active forces produces the configurational changes that constitute
the versatile swimming patterns. The enhanced mean speed of the microalgae
and the reduced mean speed of the bacteria could be further related
to the physical origin of the effect of elasticity on their swimming
speeds since favorable stroke asymmetry and swimmer elasticity contribute
to a speed-up,[17] and substantial boost
happens when they work synergistically.Active and passive rheology
measurements
were utilized to quantify the viscoelastic responses from the medium,
which contained the active suspension of two opposite-type microswimmers.
The results are shown in Figures a and 3c. The storage modulus
or elastic component (G′) of mixed cells (blue
half-filled circles in Figure a) is higher than the C. reinhardtii alone (red empty circles). The storage modulus represents the energy
stored in the elastic structure of the sample. In monocultures (Figure a), we observed the
high elastic component (G′) conspicuously
only at low oscillation frequencies. With the increasing oscillation
frequency, G′ for E. coli showed a slight dominance, and then an overlapping trend was observed
among all three monocultures. This might be due to the enhanced coupling
between the bacterial cell’s typical flagellar appendages resembling
a large dangling chain as shown in complex polymer with advancing
oscillation frequency, which contributes to the elastic component
to Young’s moduli.[25] The loss moduli
(G″) or more precisely viscous moduli for
the mixed and individual cultures were less predictable than the elastic
component (G′) at lower oscillation frequencies.
However, with the increasing oscillation frequency, the viscous component
for C. reinhardtii was slightly
higher than the other cultures as represented by red circles in Figure b,d.
Figure 3
Quantification of microrheology
changes in the microswimmer cocultures. (a, b) Storage modulus (G′) and loss modulus (G′′)
of the mixed cultures. (c, d) Storage modulus (G′)
and loss modulus (G′′) of individual
cells and tracer beads, respectively. (e, f) Complex viscosity determination
of the mixed- and monocultures of the microswimmers.
Quantification of microrheology
changes in the microswimmer cocultures. (a, b) Storage modulus (G′) and loss modulus (G′′)
of the mixed cultures. (c, d) Storage modulus (G′)
and loss modulus (G′′) of individual
cells and tracer beads, respectively. (e, f) Complex viscosity determination
of the mixed- and monocultures of the microswimmers.The loss
moduli of the individual microswimmer cultures remained similar to
that of mixed cultures (compare Figures b and 3d). Nevertheless,
a general trend appeared that rheological properties, G′ (elastic or storage modulus) and G′′
(viscous or loss modulus), vary after mixing two opposite microswimmers.
Passive rheology could be contributed by proteins and sugars secreted
by growing E. coli. They are also
known to contribute to such mechanical coupling involving complex
dynamic rheology.[22,26] This passive rheology may add
to the viscosity of medium when microalgae and bacteria are mixed
together, and this increasing viscosity speeds up self-propulsion.[27,28] The puller-type microswimmer (C. reinhardtii) seems to swim counterintuitively faster when the viscosity of its
surrounding fluid is increased, whereas the pusher-type microswimmer
(E. coli) slows down (Table and Figure ). To confirm that passive
rheology may contribute to the mechanical coupling and the mean speed
increase, we enzymatically treated the mixed microalgae–bacteria
culture with the DNase I and proteinase K which digest extracellular
polymeric substances (EPS).[29] We observed
an increase in mean speeds via EPS-mediated reduced coupling, indicating
the roles of extracellular matrices into the mechanical coupling (Figure a,b).
Figure 4
Polar graph showing enhanced
3D motion of the microalgae in the coculture (a) after DNase/Proteinase
K treatment compared with proteolytic enzyme untreated samples (b)
as an influence of mechanical coupling. The dots represent the angular
position of C. reinhardtii at
different time points, angles in this plot represent the heading direction,
numbers 0–14 on the polar graph show the segmentation lengths
of swimmers, and colors of dots denote the elevation angle [in deg]
recorded in 3D object tracking module. (c) Schematics showing polar
stretching along the swimming axis of the bacteria create polymer-like
microrheology, which contributes to the increase in viscosity of the
medium.
Polar graph showing enhanced
3D motion of the microalgae in the coculture (a) after DNase/Proteinase
K treatment compared with proteolytic enzyme untreated samples (b)
as an influence of mechanical coupling. The dots represent the angular
position of C. reinhardtii at
different time points, angles in this plot represent the heading direction,
numbers 0–14 on the polar graph show the segmentation lengths
of swimmers, and colors of dots denote the elevation angle [in deg]
recorded in 3D object tracking module. (c) Schematics showing polar
stretching along the swimming axis of the bacteria create polymer-like
microrheology, which contributes to the increase in viscosity of the
medium.We also
compared the changes in G′ and G″ when microalgae were mixed with the tracer beads (Figure , left panel). The
results indicate that the bacterial extracellular matrix in growth
medium contributes significantly to the elasticity of mixed culture.
The frequency responses observed for E. coli with and without mixing the microalgae and tracer beads were typical
of weak viscoelastic liquid which is composed of untethered polymers.[30] Furthermore, in dense bacterial suspensions,
the mechanical coupling dominates over the hydrodynamic coupling because
the length scale between the cells is below the detectable effective
hydrodynamic distance (<10 μm).[22] The changes in the complex viscosity as a function of strain are
also plotted for mixed cultures and monocultures (Figure e,f). Long-range coupling between
the opposite-type microswimmers can be explained via screening the
force field arising due to the collective swimming of the bacteria/microalgae
or the hydrodynamic effects. Like complex polymers, we cannot undermine
long-range hydrodynamic interactions originating due to the growth
of an extracellular matrix of bacteria toward a biofilm in our experiment.Also, large-scale cooperative effects in bacteria at high cell
densities, such as transient jet and vortex patterns appearing from
the random switching transition, cause turbulent collective behavior
among the cells, which are known mediators of reducing the medium
viscosity.[31] On the contrary, in low-density
suspensions, E. coli might experience
and share contacts as well as hydrodynamic interactions with their
neighbors. Bacteria with their numerous extensions and appendages
(e.g., flagella, fimbriae, lipopolysaccharides, pili, and lipoproteins)
are effectively a larger and equivalent object like C. reinhardtii than the cell body itself. Therefore,
size-based differences contributing to the mechanical and hydrodynamic
coupling could be negated. We hypothesize that pusher versus puller
complex swimming gait might lead to varying mean speeds for the two
opposite microswimmers presented herein. The basic coupling mechanism
among active microswimmers at high-density suspensions in the absence
of shear flow and the effect of microswimmer activity on effective
microrheology can be understood by their force dipole as explained
in the earlier section. In the case of C. reinhardtii as an active puller-type microswimmer, the local flow induces a
force dipole that tends to resist elongation along the swimming direction.
On the contrary, in the high-density microalgae–bacteria suspensions
the force dipole due to swimming is of the opposite sign for E. coli pushers, which favors stretching along
the swimming direction analogous to polymer-like microrheology as
shown in Figure c.
Complex
Dynamics and Pattern Formation in Active Suspensions of Self-Propelled
Microswimmers
Next, we investigated bacteria–microalgae
suspensions in context with phase behavior and kinetics in the mixture
of two opposite-type active microswimmers (pusher versus puller) behavior.
We observed an activity-induced phase separation and self-assembly
in mixtures of active bacteria–microalgae suspensions. The
phase separation in self-propelled artificial phoretic particles is
a positive accumulation feedback triggered by a slowdown of particles
due to random collisions. Contrary to artificial particles, active
bacteria or microalgae colloids could involve a different mechanism
as they avoid crossing and colliding with the neighboring active particles.[32] We observed that C. reinhardtii formed microclusters in the mixed coculture suspensions with orientation
preferences as shown with the arrow direction in Figure a and the overlay of autofluorescent
microalgae (as seen with the gray dots in Figure b and Movie S3). We found that, compared to the dynamics of the one type of active
colloid population cases, the dynamics of two opposite-type active
colloid mixtures show enhanced fluctuations with frequent fission
and fusion of clusters. We also note that the overall dynamics of
active-passive mixtures are very different from that of the corresponding
purely active systems.[5] Most importantly,
the dynamics of phase separating mixtures is much more evident with
clusters constantly moving, splitting, and merging (Movie S3).
Figure 5
Particle
image velocimetry (PIV) analysis of fluidic coupling in the bacteria–microalgae
cocultures. (a) Microalgae concentration field. Arrows exhibit the
direction or orientation of the microalgae clusters compared with
the previous frame of the image. (b) Overlay of the PIV color-coded
vector plot with time-lapse sequence from mixed E. coli and C. reinhardtii coculture
(autofluorescence tracked) showing the microalgae displacement field
overlaid with concentration field. From one time frame to the next,
the directional motion, microalgae cluster splitting, and formation
can be compared. Being smaller size and no fluorescent, bacterial
cells can be barely seen in (b). Scale bar is 20 μm.
Particle
image velocimetry (PIV) analysis of fluidic coupling in the bacteria–microalgae
cocultures. (a) Microalgae concentration field. Arrows exhibit the
direction or orientation of the microalgae clusters compared with
the previous frame of the image. (b) Overlay of the PIV color-coded
vector plot with time-lapse sequence from mixed E. coli and C. reinhardtii coculture
(autofluorescence tracked) showing the microalgae displacement field
overlaid with concentration field. From one time frame to the next,
the directional motion, microalgae cluster splitting, and formation
can be compared. Being smaller size and no fluorescent, bacterial
cells can be barely seen in (b). Scale bar is 20 μm.At lower density and early time points of
coculture, the evolution of the C. reinhardtii cluster distribution is mainly characterized by short-scale fluctuations.
Both the concentration field and the cluster flow field become smoother.
The mean concentration and the velocity field also change quite drastically
and quickly and become very smooth and correlated over scales of the
order of the cluster size. At high density and longer time scales,
both the velocity and concentration field begin to develop and exhibit
strong fluctuations, as seen in Figure a–d and Movie S3.
The velocity fields remain correlated over large length scales. The
strong fluctuations are not steady with time. The position and shape
of the fluctuations keep evolving in time, with dense regions constantly
reorganizing, merging, and breaking up, while their magnitude stabilizes
as a result of diffusion. Similar behavior is reported for single
species (pushers) and the coculture results presented herein.[33] It appears that pusher-type microswimmers transmit
these hydrodynamic fluctuations to pullers. None of these dynamic
mixing, instabilities, and pattern formation is observed in active
suspensions of puller-type microswimmers alone grown in isolations.
Figure 6
Velocity
magnitude map and velocity vector plot for (a, c) low-density coculture
and (b, d) high-density coculture.
Velocity
magnitude map and velocity vector plot for (a, c) low-density coculture
and (b, d) high-density coculture.
Conclusion
There are several unexplained phenomena in microbiology
regarding the understanding of bacterial native milieu, e.g., the
inception and diffusion of signaling molecules in quorum sensing,
the osmotic flow of nutrients via a viscoelastic medium, and the differential
efficacy of antibiotic actions at low- and high-density bacterial
populations.[34] Understanding the early
viscoelastic extracellular matrix and their influences on the neighboring
microswimmer community presented in this study may provide essential
background for the future in such investigations. Furthermore, puller-
versus pusher-type microswimmer behavior in lieu of their mutual interactions
and hydrodynamic/mechanical coupling in the fluidic media presented
herein could be used to design biohybrid microrobotic systems powered
by both E. coli and C. reinhardtii in a single microdevice.[35,36] An important next step is utilizing both the control (phototaxis
and autonomous fluorescence properties of C. reinhardtii) and sensing capabilities (optimum pH sensing of E. coli)[37] of these
diverse microswimmers, which will expand the potential applications
of biohybrid microswimmers for targeted drug delivery and environmental
remediation in the future.