Literature DB >> 18469071

Collective swimming and the dynamics of bacterial turbulence.

Charles W Wolgemuth1.   

Abstract

To swim, a bacterium pushes against the fluid within which it is immersed, generating fluid flow that dies off on a length scale comparable to the size of the bacterium. However, in dense colonies of bacteria, the bacteria are close enough that flow generated by swimming is substantial. For these cases, complex flows can arise due to the interaction and feedback between the bacteria and the fluid. Recent experiments on dense populations of swimming Bacillus subtilis have revealed a volume fraction-dependent transition from random swimming to transient jet and vortex patterns in the bacteria/fluid mixture. The fluid motions that are observed are reminiscent of flows that are observed around translating objects at moderate to high Reynolds numbers. In this work, I present a two-phase model for the bacterial/fluid mixture. The model explains turbulent flows in terms of the dipole stress that the bacteria exert on the fluid, entropic elasticity due to the rod shape of each bacterium, and the torque on the bacteria due to fluid gradients. Solving the equations in two dimensions using realistic parameters, the model reproduces empirically observed velocity fields. Dimensional analysis provides scaling relations for the dependence of the characteristic scales on the model parameters.

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Year:  2008        PMID: 18469071      PMCID: PMC2483759          DOI: 10.1529/biophysj.107.118257

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  14 in total

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2.  Real-time imaging of fluorescent flagellar filaments.

Authors:  L Turner; W S Ryu; H C Berg
Journal:  J Bacteriol       Date:  2000-05       Impact factor: 3.490

3.  The mechanics of neutrophils: synthetic modeling of three experiments.

Authors:  Marc Herant; William A Marganski; Micah Dembo
Journal:  Biophys J       Date:  2003-05       Impact factor: 4.033

4.  Hydrodynamic fluctuations and instabilities in ordered suspensions of self-propelled particles.

Authors:  R Aditi Simha; Sriram Ramaswamy
Journal:  Phys Rev Lett       Date:  2002-07-15       Impact factor: 9.161

5.  Self-concentration and large-scale coherence in bacterial dynamics.

Authors:  Christopher Dombrowski; Luis Cisneros; Sunita Chatkaew; Raymond E Goldstein; John O Kessler
Journal:  Phys Rev Lett       Date:  2004-08-24       Impact factor: 9.161

6.  Transport and collective dynamics in suspensions of confined swimming particles.

Authors:  Juan P Hernandez-Ortiz; Christopher G Stoltz; Michael D Graham
Journal:  Phys Rev Lett       Date:  2005-11-10       Impact factor: 9.161

7.  Generic phase diagram of active polar films.

Authors:  R Voituriez; J F Joanny; J Prost
Journal:  Phys Rev Lett       Date:  2006-01-17       Impact factor: 9.161

8.  Role of FlgM in sigma D-dependent gene expression in Bacillus subtilis.

Authors:  T Caramori; D Barilla; C Nessi; L Sacchi; A Galizzi
Journal:  J Bacteriol       Date:  1996-06       Impact factor: 3.490

9.  Cell motion, contractile networks, and the physics of interpenetrating reactive flow.

Authors:  M Dembo; F Harlow
Journal:  Biophys J       Date:  1986-07       Impact factor: 4.033

10.  Biased random walk models for chemotaxis and related diffusion approximations.

Authors:  W Alt
Journal:  J Math Biol       Date:  1980-04       Impact factor: 2.259

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  30 in total

1.  Multiphase flow models of biogels from crawling cells to bacterial biofilms.

Authors:  N G Cogan; Robert D Guy
Journal:  HFSP J       Date:  2010-02-12

2.  Dynamics of bacterial swarming.

Authors:  Nicholas C Darnton; Linda Turner; Svetlana Rojevsky; Howard C Berg
Journal:  Biophys J       Date:  2010-05-19       Impact factor: 4.033

3.  An immersed boundary method for two-phase fluids and gels and the swimming of Caenorhabditis elegans through viscoelastic fluids.

Authors:  Pilhwa Lee; Charles W Wolgemuth
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4.  Suspension biomechanics of swimming microbes.

Authors:  Takuji Ishikawa
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5.  Emergence of coherent structures and large-scale flows in motile suspensions.

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Journal:  J R Soc Interface       Date:  2011-08-24       Impact factor: 4.118

6.  Generalized Swift-Hohenberg models for dense active suspensions.

Authors:  Anand U Oza; Sebastian Heidenreich; Jörn Dunkel
Journal:  Eur Phys J E Soft Matter       Date:  2016-10-25       Impact factor: 1.890

7.  The effect of divalent vs. monovalent ions on the swelling of mucin-like polyelectrolyte gels: governing equations and equilibrium analysis.

Authors:  S Sircar; J P Keener; A L Fogelson
Journal:  J Chem Phys       Date:  2013-01-07       Impact factor: 3.488

8.  Meso-scale turbulence in living fluids.

Authors:  Henricus H Wensink; Jörn Dunkel; Sebastian Heidenreich; Knut Drescher; Raymond E Goldstein; Hartmut Löwen; Julia M Yeomans
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-20       Impact factor: 11.205

9.  Anomalous Fluctuations in the Orientation and Velocity of Swarming Bacteria.

Authors:  Shawn D Ryan; Gil Ariel; Avraham Be'er
Journal:  Biophys J       Date:  2016-07-12       Impact factor: 4.033

10.  Multiscale modeling and simulation of microtubule-motor-protein assemblies.

Authors:  Tong Gao; Robert Blackwell; Matthew A Glaser; M D Betterton; Michael J Shelley
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2015-12-10
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