| Literature DB >> 32333764 |
Aiping Lu1, Maren Watkins2, Qing Li3,4, Samuel D Robinson2, Gisela P Concepcion5, Mark Yandell3,6, Zhiping Weng1,7, Baldomero M Olivera2, Helena Safavi-Hemami8,9, Alexander E Fedosov10.
Abstract
Predatory gastropods of the superfamily Conoidea number over 12,000 living species. The evolutionary success of this lineage can be explained by the ability of conoideans to produce complex venoms for hunting, defense, and competitive interactions. Whereas venoms of cone snails (family Conidae) have become increasingly well studied, the venoms of most other conoidean lineages remain largely uncharacterized. In the present study, we present the venom gland transcriptomes of two species of the genus Clavus that belong to the family Drilliidae. Venom gland transcriptomes of two specimens of Clavus canalicularis and two specimens of Clavus davidgilmouri were analyzed, leading to the identification of a total of 1,176 putative venom peptide toxins (drillipeptides). Based on the combined evidence of secretion signal sequence identity, entire precursor similarity search (BLAST), and the orthology inference, putative Clavus toxins were assigned to 158 different gene families. The majority of identified transcripts comprise signal, pro-, mature peptide, and post-regions, with a typically short (<50 amino acids) and cysteine-rich mature peptide region. Thus, drillipeptides are structurally similar to conotoxins. However, convincing homology with known groups of Conus toxins was only detected for very few toxin families. Among these are Clavus counterparts of Conus venom insulins (drillinsulins), porins (drilliporins), and highly diversified lectins (drillilectins). The short size of most drillipeptides and structural similarity to conotoxins were unexpected, given that most related conoidean gastropod families (Terebridae and Turridae) possess longer mature peptide regions. Our findings indicate that, similar to conotoxins, drillipeptides may represent a valuable resource for future pharmacological exploration.Entities:
Keywords: zzm321990 Clavuszzm321990 ; Conoidea; drillipeptides; transcriptome; venom; venom gland
Mesh:
Substances:
Year: 2020 PMID: 32333764 PMCID: PMC7259678 DOI: 10.1093/gbe/evaa083
Source DB: PubMed Journal: Genome Biol Evol ISSN: 1759-6653 Impact factor: 4.065
. 1.—Phylogeny and morphology of the genus Clavus. (A) Phylogenetic tree of the superfamily Conoidea (after Puillandre et al. 2016). (B) Relationships of the Philippine species of the Clavus canalicularis species complex. (C) Marginal radular teeth of Conus (Pionoconus) circumcisus representing a hypodermic type. (D) Radula of Cv. canalicularis with distinct comb-like lateral teeth. (E) Live Cv. canalicularis (photo—courtesy of David Massemin).
. 3.—Mature peptide region length distribution. (A) Violin plot of mature peptide region size in Conus and Clavus spp. (B) Mature peptide lengths in the putative Clavus toxins with BLAST hits. (C) Scatterplot of putative Clavus toxin gene superfamilies—mature peptide region length versus log 10 normalized tpm expression level.
. 2.—Overview of Clavus spp. venom gland transcriptomes. (A–C) RBH analysis between conspecific specimens and the two species of Clavus. OX, percent identity; OY, RBH pair count. (A) Cv. canalicularis 1 versus Cv. canalicularis 2. (B) Cv. davidgilmouri 1 versus Cv. davidgilmouri 2. (C) Cv. canalicularis versus Cv. davidgilmouri. (D) Bar graph of the putative toxin gene superfamilies counts in the Cv. canalicularis and Cv. davidgilmouri (error bars denote standard deviation, spm = specimen). (E) Scatterplot of the putative toxin gene superfamilies counts in the Cv. canalicularis (x) and Cv. davidgilmouri (y). (F) Bar graph of the putative toxin gene superfamilies total expression levels in the Cv. canalicularis and Cv. davidgilmouri (error bars denote standard deviation). (G) Scatterplot of the putative toxin gene superfamilies total expression levels (log-normalized) in the Cv. canalicularis (x) and Cv. davidgilmouri (y).
. 4.—Diversity of the predicted toxins in the drillipeptide superfamily 7. (A) Venn diagram of the drillipeptide diversity in studied specimens of Clavus. (B) Alignment of 64 predicted complete precursors.
. 5.—Clavus insulins. (A) Comparative sequence alignment of Clavus insulins and their expression values (tpm) showing conserved signal peptides and variable A and B chain regions. Amino acid conservations are denoted by an asterisk (*). Full stops (.) and colons (:) represent a low and high degree of similarity, respectively. (B) Alignment of the B and A chains of two representative Clavus insulins (purple) with insulins sequenced from the marine worm Platynereis dumerilii and venom insulins sequenced from worm-hunting cone snails (pink). An alignment of the B and A chains of zebrafish insulin with venom insulins from fish-hunting cone snails is shown for comparison. Cysteines are shown in yellow and disulfide frameworks are depicted as connecting lines. Amino acid code: O = hydroxyproline; y = y-carboxylated glutamate; #, C-terminal amidation. (C) Bayesian phylogenetic trees of the gastropod insulins. Left: based on the analysis of entire precursor; right: based on the mature peptide region. Diameter of black circles proportional to support (as posterior probability 0.50–1) of corresponding nodes. Thickened lines denote segment of the tree corresponding to conoidean venom insulins. Colored segments as brown: heterobranchia; dark-blue: Charonia tritonis (Tonnoidea); dark green: Conus nerve ring; yellow: Turridae; blue: Clavus spp.; and light-green: Conus venom gland.
. 6.—Bayesian phylogenetic tree of neogastropod porins. Coluporins highlighted with orange, Conoporins—with blue, Clavus porin clusters—with green. Nodes with the Bayesian PP support >0.75 marked with gray circles, and with the PP > 0.9—with black circles.