| Literature DB >> 32333079 |
Ishaan Maitra1, Camilo L M Morais2, Kássio M G Lima3,4, Katherine M Ashton5, Danielle Bury6, Ravindra S Date5, Francis L Martin7.
Abstract
Raman spectroscopy is a fast and sensitive technique able to identify molecular changes in biological specimens. Herein, we report on three cases where Raman microspectroscopy was used to distinguish normal vs. oesophageal adenocarcinoma (OAC) (case 1) and Barrett's oesophagus vs. OAC (cases 2 and 3) in a non-destructive and highly accurate fashion. Normal and OAC tissues were discriminated using principal component analysis plus linear discriminant analysis (PCA-LDA) with 97% accuracy (94% sensitivity and 100% specificity) (case 1); Barrett's oesophagus vs. OAC tissues were discriminated with accuracies ranging from 98 to 100% (97-100% sensitivity and 100% specificity). Spectral markers responsible for class differentiation were obtained through the difference-between-mean spectrum for each group and the PCA loadings, where C-O-C skeletal mode in β-glucose (900 cm-1), lipids (967 cm-1), phosphodioxy (1296 cm-1), deoxyribose (1456 cm-1) and collagen (1445, 1665 cm-1) were associated with normal and OAC tissue differences. Phenylalanine (1003 cm-1), proline/collagen (1066, 1445 cm-1), phospholipids (1130 cm-1), CH2 angular deformation (1295 cm-1), disaccharides (1462 cm-1) and proteins (amide I, 1672/5 cm-1) were associated with Barrett's oesophagus and OAC tissue differences. These findings show the potential of using Raman microspectroscopy imaging for fast and accurate diagnoses of oesophageal pathologies and establishing subtle molecular changes predisposing to adenocarcinoma in a clinical setting. Graphical abstract Graphical abstract demonstrating how oesophageal tissue is processed through Raman mapping analysis in order to detect spectral differences between stages of oesophageal transformation to adenocarcinoma.Entities:
Keywords: Barrett’s oesophagus; Oesophageal adenocarcinoma; Principal component analysis; Raman mapping; Raman spectroscopy
Year: 2020 PMID: 32333079 PMCID: PMC7320044 DOI: 10.1007/s00216-020-02637-1
Source DB: PubMed Journal: Anal Bioanal Chem ISSN: 1618-2642 Impact factor: 4.142
Fig. 1Ulcerative lesion on background of Barrett’s oesophagus (35 cm from incisors, 1 cm length)
Fig. 2a Average raw Raman spectrum for OAC and normal tissue (case 1). b Average pre-processed (Savitzky–Golay smoothing [21 points window, 2nd order polynomial fitting] and AWLS baseline correction) Raman spectrum for OAC and normal tissue (case 1). c PCA scores plot for OAC and normal tissue. d PCA-LDA discriminant function (DF) plot for OAC and normal tissue (case 1)
Fig. 3a Raw and b PCA-recovered images for normal tissue. c Raw and d PCA-recovered images for OAC tissue. e Difference-between-mean (DBM) spectrum and PCA loadings between normal tissue vs. OAC (case 1). Colour bar: mean relative intensity
Fig. 4a Average raw Raman spectrum for OAC and Barrett’s oesophagus tissue (case 2). b Average pre-processed (Savitzky–Golay smoothing [21 points window, 2nd order polynomial fitting] and AWLS baseline correction) Raman spectrum for OAC and Barrett’s oesophagus tissue (case 2). c PCA scores plot for Barrett’s oesophagus tissue and OAC tissue. d PCA-LDA discriminant function (DF) plot for OAC and Barrett’s oesophagus tissue (case 2)
Fig. 5a Raw and b PCA-recovered images for Barrett’s oesophagus tissue. c Raw and d PCA-recovered images for OAC tissue. e Difference-between-mean (DBM) spectrum and PCA loadings between OAC vs. Barrett’s oesophagus tissue (case 2). Colour bar: mean relative intensity
Fig. 6a Average raw Raman spectrum for OAC and Barrett’s oesophagus tissue (case 3). b Average pre-processed (Savitzky–Golay smoothing [21 points window, 2nd order polynomial fitting] and AWLS baseline correction) Raman spectrum for OAC and Barrett’s oesophagus tissue (case 3). c PCA scores plot for Barrett’s oesophagus and OAC tissue (case 3). d PCA-LDA discriminant function (DF) plot for OAC and Barrett’s oesophagus tissue (case 3)
Fig. 7a Raw and b PCA-recovered images for Barrett’s oesophagus tissue. c Raw and d PCA-recovered images for OAC tissue. e Difference-between-mean (DBM) spectrum and PCA loadings between Barrett’s oesophagus vs. OAC tissue (case 3). Colour bar: mean relative intensity