Literature DB >> 21198189

Evaluation of linear discriminant analysis for automated Raman histological mapping of esophageal high-grade dysplasia.

Joanne Hutchings1, Catherine Kendall, Neil Shepherd, Hugh Barr, Nicholas Stone.   

Abstract

Rapid Raman mapping has the potential to be used for automated histopathology diagnosis, providing an adjunct technique to histology diagnosis. The aim of this work is to evaluate the feasibility of automated and objective pathology classification of Raman maps using linear discriminant analysis. Raman maps of esophageal tissue sections are acquired. Principal component (PC)-fed linear discriminant analysis (LDA) is carried out using subsets of the Raman map data (6483 spectra). An overall (validated) training classification model performance of 97.7% (sensitivity 95.0 to 100% and specificity 98.6 to 100%) is obtained. The remainder of the map spectra (131,672 spectra) are projected onto the classification model resulting in Raman images, demonstrating good correlation with contiguous hematoxylin and eosin (HE) sections. Initial results suggest that LDA has the potential to automate pathology diagnosis of esophageal Raman images, but since the classification of test spectra is forced into existing training groups, further work is required to optimize the training model. A small pixel size is advantageous for developing the training datasets using mapping data, despite lengthy mapping times, due to additional morphological information gained, and could facilitate differentiation of further tissue groups, such as the basal cells∕lamina propria, in the future, but larger pixels sizes (and faster mapping) may be more feasible for clinical application.

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Year:  2010        PMID: 21198189     DOI: 10.1117/1.3512244

Source DB:  PubMed          Journal:  J Biomed Opt        ISSN: 1083-3668            Impact factor:   3.170


  6 in total

1.  Discrimination of basal cell carcinoma and melanoma from normal skin biopsies in vitro through Raman spectroscopy and principal component analysis.

Authors:  Benito Bodanese; Fabrício Luiz Silveira; Renato Amaro Zângaro; Marcos Tadeu T Pacheco; Carlos Augusto Pasqualucci; Landulfo Silveira
Journal:  Photomed Laser Surg       Date:  2012-06-13       Impact factor: 2.796

2.  Macromolecular Profiling of Organelles in Normal Diploid and Cancer Cells.

Authors:  Svitlana M Levchenko; Andrey N Kuzmin; Artem Pliss; Junle Qu; Paras N Prasad
Journal:  Anal Chem       Date:  2017-09-26       Impact factor: 6.986

3.  Diagnosis of tumors during tissue-conserving surgery with integrated autofluorescence and Raman scattering microscopy.

Authors:  Kenny Kong; Christopher J Rowlands; Sandeep Varma; William Perkins; Iain H Leach; Alexey A Koloydenko; Hywel C Williams; Ioan Notingher
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-03       Impact factor: 11.205

Review 4.  Raman Spectroscopy: Guiding Light for the Extracellular Matrix.

Authors:  Mads S Bergholt; Andrea Serio; Michael B Albro
Journal:  Front Bioeng Biotechnol       Date:  2019-11-01

5.  When cells divide: Label-free multimodal spectral imaging for exploratory molecular investigation of living cells during cytokinesis.

Authors:  Jen-Fang Hsu; Pei-Ying Hsieh; Hsin-Yun Hsu; Shinsuke Shigeto
Journal:  Sci Rep       Date:  2015-12-03       Impact factor: 4.379

6.  Establishing spectrochemical changes in the natural history of oesophageal adenocarcinoma from tissue Raman mapping analysis.

Authors:  Ishaan Maitra; Camilo L M Morais; Kássio M G Lima; Katherine M Ashton; Danielle Bury; Ravindra S Date; Francis L Martin
Journal:  Anal Bioanal Chem       Date:  2020-04-25       Impact factor: 4.142

  6 in total

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