Literature DB >> 32302571

G3BP1 Is a Tunable Switch that Triggers Phase Separation to Assemble Stress Granules.

Peiguo Yang1, Cécile Mathieu2, Regina-Maria Kolaitis1, Peipei Zhang1, James Messing2, Ugur Yurtsever3, Zemin Yang1, Jinjun Wu1, Yuxin Li4, Qingfei Pan5, Jiyang Yu5, Erik W Martin6, Tanja Mittag6, Hong Joo Kim1, J Paul Taylor7.   

Abstract

The mechanisms underlying ribonucleoprotein (RNP) granule assembly, including the basis for establishing and maintaining RNP granules with distinct composition, are unknown. One prominent type of RNP granule is the stress granule (SG), a dynamic and reversible cytoplasmic assembly formed in eukaryotic cells in response to stress. Here, we show that SGs assemble through liquid-liquid phase separation (LLPS) arising from interactions distributed unevenly across a core protein-RNA interaction network. The central node of this network is G3BP1, which functions as a molecular switch that triggers RNA-dependent LLPS in response to a rise in intracellular free RNA concentrations. Moreover, we show that interplay between three distinct intrinsically disordered regions (IDRs) in G3BP1 regulates its intrinsic propensity for LLPS, and this is fine-tuned by phosphorylation within the IDRs. Further regulation of SG assembly arises through positive or negative cooperativity by extrinsic G3BP1-binding factors that strengthen or weaken, respectively, the core SG network.
Copyright © 2020 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  G3BP1; Intrinsically disordered protein; biomolecular condensate; cooperativity; core stress granule network; liquid-liquid phase separation; membraneless organelle; molecular switch; multivalency; stress granule

Mesh:

Substances:

Year:  2020        PMID: 32302571      PMCID: PMC7448383          DOI: 10.1016/j.cell.2020.03.046

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  73 in total

1.  Robust statistical methods for hit selection in RNA interference high-throughput screening experiments.

Authors:  Xiaohua Douglas Zhang; Xiting Cindy Yang; Namjin Chung; Adam Gates; Erica Stec; Priya Kunapuli; Dan J Holder; Marc Ferrer; Amy S Espeseth
Journal:  Pharmacogenomics       Date:  2006-04       Impact factor: 2.533

2.  A general framework for weighted gene co-expression network analysis.

Authors:  Bin Zhang; Steve Horvath
Journal:  Stat Appl Genet Mol Biol       Date:  2005-08-12

3.  Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources.

Authors:  Da Wei Huang; Brad T Sherman; Richard A Lempicki
Journal:  Nat Protoc       Date:  2009       Impact factor: 13.491

4.  Dual specificity kinase DYRK3 couples stress granule condensation/dissolution to mTORC1 signaling.

Authors:  Frank Wippich; Bernd Bodenmiller; Maria Gustafsson Trajkovska; Stefanie Wanka; Ruedi Aebersold; Lucas Pelkmans
Journal:  Cell       Date:  2013-02-14       Impact factor: 41.582

5.  Overview of current methods in sedimentation velocity and sedimentation equilibrium analytical ultracentrifugation.

Authors:  Huaying Zhao; Chad A Brautigam; Rodolfo Ghirlando; Peter Schuck
Journal:  Curr Protoc Protein Sci       Date:  2013-02

6.  DDX3X acts as a live-or-die checkpoint in stressed cells by regulating NLRP3 inflammasome.

Authors:  Parimal Samir; Sannula Kesavardhana; Deanna M Patmore; Sebastien Gingras; R K Subbarao Malireddi; Rajendra Karki; Clifford S Guy; Benoit Briard; David E Place; Anannya Bhattacharya; Bhesh Raj Sharma; Amanda Nourse; Sharon V King; Aaron Pitre; Amanda R Burton; Stephane Pelletier; Richard J Gilbertson; Thirumala-Devi Kanneganti
Journal:  Nature       Date:  2019-09-11       Impact factor: 69.504

7.  STRING v10: protein-protein interaction networks, integrated over the tree of life.

Authors:  Damian Szklarczyk; Andrea Franceschini; Stefan Wyder; Kristoffer Forslund; Davide Heller; Jaime Huerta-Cepas; Milan Simonovic; Alexander Roth; Alberto Santos; Kalliopi P Tsafou; Michael Kuhn; Peer Bork; Lars J Jensen; Christian von Mering
Journal:  Nucleic Acids Res       Date:  2014-10-28       Impact factor: 16.971

8.  Viral and cellular proteins containing FGDF motifs bind G3BP to block stress granule formation.

Authors:  Marc D Panas; Tim Schulte; Bastian Thaa; Tatiana Sandalova; Nancy Kedersha; Adnane Achour; Gerald M McInerney
Journal:  PLoS Pathog       Date:  2015-02-06       Impact factor: 6.823

9.  G3BP-Caprin1-USP10 complexes mediate stress granule condensation and associate with 40S subunits.

Authors:  Nancy Kedersha; Marc D Panas; Christopher A Achorn; Shawn Lyons; Sarah Tisdale; Tyler Hickman; Marshall Thomas; Judy Lieberman; Gerald M McInerney; Pavel Ivanov; Paul Anderson
Journal:  J Cell Biol       Date:  2016-03-28       Impact factor: 10.539

10.  RNA self-assembly contributes to stress granule formation and defining the stress granule transcriptome.

Authors:  Briana Van Treeck; David S W Protter; Tyler Matheny; Anthony Khong; Christopher D Link; Roy Parker
Journal:  Proc Natl Acad Sci U S A       Date:  2018-02-26       Impact factor: 11.205

View more
  191 in total

1.  A quantitative inventory of yeast P body proteins reveals principles of composition and specificity.

Authors:  Wenmin Xing; Denise Muhlrad; Roy Parker; Michael K Rosen
Journal:  Elife       Date:  2020-06-19       Impact factor: 8.140

2.  Designer protein assemblies with tunable phase diagrams in living cells.

Authors:  Meta Heidenreich; Joseph M Georgeson; Emanuele Locatelli; Lorenzo Rovigatti; Saroj Kumar Nandi; Avital Steinberg; Yotam Nadav; Eyal Shimoni; Samuel A Safran; Jonathan P K Doye; Emmanuel D Levy
Journal:  Nat Chem Biol       Date:  2020-07-13       Impact factor: 15.040

Review 3.  Generic nature of the condensed states of proteins.

Authors:  Monika Fuxreiter; Michele Vendruscolo
Journal:  Nat Cell Biol       Date:  2021-06-09       Impact factor: 28.824

Review 4.  Emerging Roles for Phase Separation in Plants.

Authors:  Ryan J Emenecker; Alex S Holehouse; Lucia C Strader
Journal:  Dev Cell       Date:  2020-10-12       Impact factor: 12.270

5.  Ubiquitin-Modulated Phase Separation of Shuttle Proteins: Does Condensate Formation Promote Protein Degradation?

Authors:  Thuy P Dao; Carlos A Castañeda
Journal:  Bioessays       Date:  2020-09-03       Impact factor: 4.345

6.  Do not curse the darkness of the spinal cord, light TDP-43.

Authors:  Kazuhide Asakawa; Hiroshi Handa; Koichi Kawakami
Journal:  Neural Regen Res       Date:  2021-05       Impact factor: 5.135

Review 7.  The functional organization of axonal mRNA transport and translation.

Authors:  Irene Dalla Costa; Courtney N Buchanan; Matthew D Zdradzinski; Pabitra K Sahoo; Terika P Smith; Elizabeth Thames; Amar N Kar; Jeffery L Twiss
Journal:  Nat Rev Neurosci       Date:  2020-12-07       Impact factor: 34.870

Review 8.  Biomolecular condensates at the nexus of cellular stress, protein aggregation disease and ageing.

Authors:  Simon Alberti; Anthony A Hyman
Journal:  Nat Rev Mol Cell Biol       Date:  2021-01-28       Impact factor: 94.444

Review 9.  RNA-binding proteins in human genetic disease.

Authors:  Fátima Gebauer; Thomas Schwarzl; Juan Valcárcel; Matthias W Hentze
Journal:  Nat Rev Genet       Date:  2020-11-24       Impact factor: 53.242

10.  Weak binding to the A2RE RNA rigidifies hnRNPA2 RRMs and reduces liquid-liquid phase separation and aggregation.

Authors:  Veronica H Ryan; Scott Watters; Joshua Amaya; Balabhadra Khatiwada; Vincenzo Venditti; Mandar T Naik; Nicolas L Fawzi
Journal:  Nucleic Acids Res       Date:  2020-10-09       Impact factor: 16.971

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.