Literature DB >> 32301185

Accelerating GluCEST imaging using deep learning for B0 correction.

Yiran Li1, Danfeng Xie1, Abigail Cember2, Ravi Prakash Reddy Nanga2, Hanlu Yang1, Dushyant Kumar2, Hari Hariharan2, Li Bai1, John A Detre3, Ravinder Reddy2, Ze Wang4.   

Abstract

PURPOSE: Glutamate weighted Chemical Exchange Saturation Transfer (GluCEST) MRI is a noninvasive technique for mapping parenchymal glutamate in the brain. Because of the sensitivity to field (B0 ) inhomogeneity, the total acquisition time is prolonged due to the repeated image acquisitions at several saturation offset frequencies, which can cause practical issues such as increased sensitivity to patient motions. Because GluCEST signal is derived from the small z-spectrum difference, it often has a low signal-to-noise-ratio (SNR). We proposed a novel deep learning (DL)-based algorithm armed with wide activation neural network blocks to address both issues.
METHODS: B0 correction based on reduced saturation offset acquisitions was performed for the positive and negative sides of the z-spectrum separately. For each side, a separate deep residual network was trained to learn the nonlinear mapping from few CEST-weighted images acquired at different ppm values to the one at 3 ppm (where GluCEST peaks) in the same side of the z-spectrum.
RESULTS: All DL-based methods outperformed the "traditional" method visually and quantitatively. The wide activation blocks-based method showed the highest performance in terms of Structural Similarity Index (SSIM) and peak signal-to-noise ratio (PSNR), which were 0.84 and 25dB respectively. SNR increases in regions of interest were over 8dB.
CONCLUSION: We demonstrated that the new DL-based method can reduce the entire GluCEST imaging time by ˜50% and yield higher SNR than current state-of-the-art.
© 2020 International Society for Magnetic Resonance in Medicine.

Entities:  

Keywords:  GluCEST; deep learning; deep residual network; wide activation

Mesh:

Substances:

Year:  2020        PMID: 32301185      PMCID: PMC8082274          DOI: 10.1002/mrm.28289

Source DB:  PubMed          Journal:  Magn Reson Med        ISSN: 0740-3194            Impact factor:   4.668


  23 in total

1.  Magnetization transfer in MRI: a review.

Authors:  R M Henkelman; G J Stanisz; S J Graham
Journal:  NMR Biomed       Date:  2001-04       Impact factor: 4.044

2.  DeepCEST: 9.4 T Chemical exchange saturation transfer MRI contrast predicted from 3 T data - a proof of concept study.

Authors:  Moritz Zaiss; Anagha Deshmane; Mark Schuppert; Kai Herz; Felix Glang; Philipp Ehses; Tobias Lindig; Benjamin Bender; Ulrike Ernemann; Klaus Scheffler
Journal:  Magn Reson Med       Date:  2019-02-25       Impact factor: 4.668

3.  In vivo measurement of glutamate loss is associated with synapse loss in a mouse model of tauopathy.

Authors:  Rachelle Crescenzi; Catherine DeBrosse; Ravi Prakash Reddy Nanga; Sanjana Reddy; Mohammed Haris; Hari Hariharan; Michiyo Iba; Virginia M Y Lee; John A Detre; Arijitt Borthakur; Ravinder Reddy
Journal:  Neuroimage       Date:  2014-07-05       Impact factor: 6.556

4.  Exchange rates of creatine kinase metabolites: feasibility of imaging creatine by chemical exchange saturation transfer MRI.

Authors:  Mohammad Haris; Ravi Prakash Reddy Nanga; Anup Singh; Kejia Cai; Feliks Kogan; Hari Hariharan; Ravinder Reddy
Journal:  NMR Biomed       Date:  2012-03-20       Impact factor: 4.044

5.  Deep learning enables reduced gadolinium dose for contrast-enhanced brain MRI.

Authors:  Enhao Gong; John M Pauly; Max Wintermark; Greg Zaharchuk
Journal:  J Magn Reson Imaging       Date:  2018-02-13       Impact factor: 4.813

6.  Longitudinal imaging reveals subhippocampal dynamics in glutamate levels associated with histopathologic events in a mouse model of tauopathy and healthy mice.

Authors:  Rachelle Crescenzi; Catherine DeBrosse; Ravi P R Nanga; Matthew D Byrne; Guruprasad Krishnamoorthy; Kevin D'Aquilla; Hari Nath; Knashawn H Morales; Michiyo Iba; Hari Hariharan; Virginia M Y Lee; John A Detre; Ravinder Reddy
Journal:  Hippocampus       Date:  2017-02-03       Impact factor: 3.899

7.  In vivo mapping of brain myo-inositol.

Authors:  Mohammad Haris; Kejia Cai; Anup Singh; Hari Hariharan; Ravinder Reddy
Journal:  Neuroimage       Date:  2010-10-14       Impact factor: 6.556

8.  Practical data acquisition method for human brain tumor amide proton transfer (APT) imaging.

Authors:  Jinyuan Zhou; Jaishri O Blakeley; Jun Hua; Mina Kim; John Laterra; Martin G Pomper; Peter C M van Zijl
Journal:  Magn Reson Med       Date:  2008-10       Impact factor: 4.668

9.  Water saturation shift referencing (WASSR) for chemical exchange saturation transfer (CEST) experiments.

Authors:  Mina Kim; Joseph Gillen; Bennett A Landman; Jinyuan Zhou; Peter C M van Zijl
Journal:  Magn Reson Med       Date:  2009-06       Impact factor: 4.668

10.  Reproducibility of 2D GluCEST in healthy human volunteers at 7 T.

Authors:  Ravi Prakash Reddy Nanga; Catherine DeBrosse; Dushyant Kumar; David Roalf; Brendan McGeehan; Kevin D'Aquilla; Arijitt Borthakur; Hari Hariharan; Damodara Reddy; Mark Elliott; John A Detre; Cynthia Neill Epperson; Ravinder Reddy
Journal:  Magn Reson Med       Date:  2018-05-25       Impact factor: 4.668

View more
  5 in total

Review 1.  Hyperpolarized MRI, functional MRI, MR spectroscopy and CEST to provide metabolic information in vivo.

Authors:  Peter C M van Zijl; Kevin Brindle; Hanzhang Lu; Peter B Barker; Richard Edden; Nirbhay Yadav; Linda Knutsson
Journal:  Curr Opin Chem Biol       Date:  2021-07-20       Impact factor: 8.972

2.  Quasi-steady-state CEST (QUASS CEST) solution improves the accuracy of CEST quantification: QUASS CEST MRI-based omega plot analysis.

Authors:  Phillip Zhe Sun
Journal:  Magn Reson Med       Date:  2021-03-10       Impact factor: 3.737

Review 3.  Review and consensus recommendations on clinical APT-weighted imaging approaches at 3T: Application to brain tumors.

Authors:  Jinyuan Zhou; Moritz Zaiss; Linda Knutsson; Phillip Zhe Sun; Sung Soo Ahn; Silvio Aime; Peter Bachert; Jaishri O Blakeley; Kejia Cai; Michael A Chappell; Min Chen; Daniel F Gochberg; Steffen Goerke; Hye-Young Heo; Shanshan Jiang; Tao Jin; Seong-Gi Kim; John Laterra; Daniel Paech; Mark D Pagel; Ji Eun Park; Ravinder Reddy; Akihiko Sakata; Sabine Sartoretti-Schefer; A Dean Sherry; Seth A Smith; Greg J Stanisz; Pia C Sundgren; Osamu Togao; Moriel Vandsburger; Zhibo Wen; Yin Wu; Yi Zhang; Wenzhen Zhu; Zhongliang Zu; Peter C M van Zijl
Journal:  Magn Reson Med       Date:  2022-04-22       Impact factor: 3.737

4.  B0 Correction for 3T Amide Proton Transfer (APT) MRI Using a Simplified Two-Pool Lorentzian Model of Symmetric Water and Asymmetric Solutes.

Authors:  Yibing Chen; Xujian Dang; Benqi Zhao; Zhuozhao Zheng; Xiaowei He; Xiaolei Song
Journal:  Tomography       Date:  2022-08-01

5.  Volumetric glutamate imaging (GluCEST) using 7T MRI can lateralize nonlesional temporal lobe epilepsy: A preliminary study.

Authors:  Peter N Hadar; Lohith G Kini; Ravi Prakash Reddy Nanga; Russell T Shinohara; Stephanie H Chen; Preya Shah; Laura E M Wisse; Mark A Elliott; Hari Hariharan; Ravinder Reddy; John A Detre; Joel M Stein; Sandhitsu Das; Kathryn A Davis
Journal:  Brain Behav       Date:  2021-07-13       Impact factor: 2.708

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.