| Literature DB >> 32293292 |
Ru Liu1, Lei Song2, Lin Jiang1, Xiaofang Tang1, Lianjun Xu1, Zhan Gao1, Xueyan Zhao1, Jingjing Xu1, Runlin Gao1, Jinqing Yuan3.
Abstract
BACKGROUND: Data of susceptible gene polymorphisms related to progression of coronary atherosclerosis in patients with three-vessel disease (TVD) is limited in China. This case-control study aimed to analyze the differences of variant carrier frequencies between cases and controls, and to explain the possible genetic effects on the progression of TVD.Entities:
Keywords: Codominant model; Coronary artery disease; Dominant model; Recessive model; Single nucleotide polymorphism; Three-vessel disease
Mesh:
Substances:
Year: 2020 PMID: 32293292 PMCID: PMC7161109 DOI: 10.1186/s12872-020-01449-6
Source DB: PubMed Journal: BMC Cardiovasc Disord ISSN: 1471-2261 Impact factor: 2.298
The baseline clinical characteristics
| MACCE group ( | Non-CAD group ( | ||
|---|---|---|---|
| Age, year | 62.8 ± 10.2 | 50.5 ± 11.5 | < 0.0001 |
| Male, % | 270 (78.9) | 198 (57.6) | < 0.0001 |
| BMI, kg/m2 | 25.7 ± 3.2 | 25.3 ± 3.1 | 0.147 |
| Hypertension, % | 241 (70.5) | 44 (12.8) | < 0.0001 |
| DM, % | 134 (39.2) | 14 (4.1) | < 0.0001 |
| Hyperlipidemia, % | 209 (61.1) | 25 (7.3) | < 0.0001 |
| Stroke, % | 56 (16.4) | 1 (0.3) | < 0.0001 |
| PVD, % | 31 (9.1) | 0 (0.0) | < 0.0001 |
| Smoking history, % | 201 (58.8) | 64 (18.6) | < 0.0001 |
| WBC, *109/L | 7.21 ± 2.08 | 6.25 ± 1.73 | < 0.0001 |
| Hemoglobin, g/L | 136.7 ± 14.9 | 144.9 ± 12.3 | < 0.0001 |
| ALT, IU/L | 30.2 ± 22.6 | 24.2 ± 16.0 | < 0.0001 |
| Serum creatinine, μmol/L | 84.5 ± 22.0 | 72.6 ± 18.4 | < 0.0001 |
| Uric acid, μmol/L | 322.1 ± 88.3 | 332.4 ± 98.2 | 0.151 |
| Triglyceride, mmol/L | 1.77 ± 0.94 | 1.72 ± 1.19 | 0.533 |
| Total cholesterol, mmol/L | 4.61 ± 1.07 | 4.68 ± 1.15 | 0.389 |
| HDL-C, mmol/L | 1.05 ± 0.24 | 1.15 ± 0.32 | < 0.0001 |
| LDL-C, mmol/L | 2.56 ± 0.81 | 2.87 ± 0.88 | < 0.0001 |
| FPG, mmol/L | 6.31 ± 2.32 | 5.61 ± 1.23 | < 0.0001 |
| CK-MB, IU/L | 19.4 ± 40.9 | 14.9 ± 4.5 | 0.046 |
| Hs-CRP, mg/L | 3.77 ± 3.62 | 2.23 ± 1.57 | < 0.0001 |
ALT alanine transaminase, BMI, body mass index, CAD coronary artery disease, CK-MB creatine kinase-muscle/brain, DM diabetes mellitus, FPG fasting plasma glucose, HDL-C High-density lipoprotein cholesterol, Hs-CRP High-sensitivity C-reactive protein, LDL-C Low-density lipoprotein cholesterol, MACCE major adverse cardiovascular and cerebrovascular events, PVD peripheral vessel disease, WBC white blood cell count
Candidate SNP association analysis
| Gene | SNP | Allele model | MACCE group ( | Non-CAD group | |
|---|---|---|---|---|---|
| rs1063192 A > G | DO AA/GG + GA | 223/119 | 195/149 | ||
| RE GG/GA + AA | 14/328 | 15/329 | 0.862 | ||
| CO GG/GA/AA | 14/105/223 | 15/134/195 | 0.066 | ||
| rs10757274 A > G | DO AA/GG + GA | 74/268 | 112/232 | ||
| RE GG/GA + AA | 94/248 | 65/279 | |||
| CO GG/GA/AA | 94/174/74 | 65/167/112 | |||
| rs1333042 G > A | DO GG/AA+GA | 177/165 | 136/208 | ||
| RE AA/GA + GG | 23/319 | 35/309 | 0.104 | ||
| CO AA/GA/GG | 23/142/177 | 35/173/136 | |||
| rs1333049 G > C | DO GG/CC + GC | 67/275 | 105/239 | ||
| RE CC/GC + GG | 101/241 | 69/275 | |||
| CO CC/GC/GG | 101/174/67 | 69/170/105 | |||
| rs3217986 T > G | DO TT/GG + GT | 279/63 | 303/41 | ||
| RE GG/GT + TT | 3/339 | 0/344 | 0.082 | ||
| CO GG/GT/TT | 3/60/279 | 0/41/303 | |||
| rs4977574 A > G | DO AA/GG + GA | 73/269 | 111/233 | ||
| RE GG/GA + AA | 94/248 | 65/279 | |||
| CO GG/GA/AA | 94/175/73 | 65/168/111 | |||
| rs9632884 C > G | DO CC/GG + GC | 192/150 | 152/192 | ||
| RE GG/GC + CC | 26/316 | 25/319 | 0.867 | ||
| CO GG/GC/CC | 26/124/192 | 25/167/152 | |||
| rs1055432 C > A | DO CC/AA+AC | 242/99 | 266/78 | ||
| RE AA/AC + CC | 4/337 | 3/341 | 0.695 | ||
| CO AA/AC/CC | 4/95/242 | 3/75/266 | 0.164 | ||
| rs8176694 T > C | DO TT/CC + CT | 315/25 | 300/40 | ||
| RE CC/CT + TT | 6/334 | 11/329 | 0.219 | ||
| CO CC/CT/TT | 6/19/315 | 11/29/300 | 0.141 |
CO codominant model, DO dominant model, MACCE major adverse cardiovascular and cerebrovascular events, RE recessive model, SNP single nucleotide polymorphism
FDR BH adjustment
| Allele model | Gene | SNP | ||
|---|---|---|---|---|
| Dominant model | CDKN2B-AS1 | rs1333049 | 0.001 | 0.009 |
| CDKN2B-AS1 | rs1333042 | 0.001 | 0.009 | |
| CDKN2B-AS1 | rs10757274 | 0.001 | 0.009 | |
| CDKN2B-AS1 | rs4977574 | 0.001 | 0.009 | |
| CDKN2B-AS1 | rs9632884 | 0.002 | 0.009 | |
| CDKN2B-AS1 | rs3217986 | 0.018 | 0.054 | |
| CDKN2B-AS1 | rs1063192 | 0.022 | 0.0495 | |
| Recessive model | CDKN2B-AS1 | rs1333049 | 0.004 | 0.036 |
| CDKN2B-AS1 | rs4977574 | 0.008 | 0.036 | |
| CDKN2B-AS1 | rs10757274 | 0.008 | 0.036 | |
| Codominant model | CDKN2B-AS1 | rs1333049 | 0.001 | 0.009 |
| CDKN2B-AS1 | rs4977574 | 0.001 | 0.009 | |
| CDKN2B-AS1 | rs10757274 | 0.001 | 0.009 | |
| CDKN2B-AS1 | rs9632884 | 0.004 | 0.018 | |
| CDKN2B-AS1 | rs1333042 | 0.004 | 0.018 | |
| CDKN2B-AS1 | rs3217986 | 0.023 | 0.069 |
FDR BH false discovery rate Benjamini-Hochberg
Q-value = P-value*number of hypothesis testing/rank of P-value
Number of hypothesis testing = number of SNPs detected on one gene
Multivariate logistic regression
| Gene | SNP | Allele model | OR (95%CI) | |
|---|---|---|---|---|
| CDKN2B-AS1 | rs1063192 A > G | DO AA/GG + GA | 0.85 (0.45, 1.60) | 0.613 |
| RE GG/GA + AA | 0.25 (0.06, 1.00) | 0.05 | ||
| rs10757274 A > G | DO AA/GG + GA | 0.99 (0.45, 2.05) | 0.977 | |
| RE GG/GA + AA | 0.86 (0.42, 1.74) | 0.67 | ||
| rs1333042 G > A | DO GG/AA+GA | 1.00 (0.53, 1.86) | 0.99 | |
| RE AA/GA + GG | 2.14 (0.79, 5.83) | 0.137 | ||
| rs1333049 G > C | DO GG/CC + GC | 1.43 (0.69, 2.98) | 0.338 | |
| RE CC/GC + GG | 1.21 (0.60, 2.43) | 0.593 | ||
| rs3217986 T > G | DO TT/GG + GT | 1.29 (0.53, 3.14) | 0.572 | |
| RE GG/GT + TT | ||||
| rs4977574 A > G | DO AA/GG + GA | 1.00 (0.48, 2.06) | 0.989 | |
| RE GG/GA + AA | 0.86 (0.42, 1.74) | 0.67 | ||
| rs9632884 C > G | DO CC/GG + GC | 0.95 (0.51, 1.78) | 0.872 | |
| RE GG/GC + CC | 0.24 (0.09, 0.65) | 0.005 | ||
| ADAMTS13 | rs1055432 C > A | DO CC/AA+AC | 1.43 (0.72, 2.86) | 0.307 |
| RE AA/AC + CC | 1.34 (0.03, 64.99) | 0.882 | ||
| ABO | rs8176694 T > C | DO TT/CC + CT | 0.28 (0.07, 1.14) | 0.075 |
| RE CC/CT + TT | 0.70 (0.09, 5.53) | 0.733 |
CI confidence interval, OR odds ratio, SNP single nucleotide polymorphism