Literature DB >> 32286817

TeroKit: A Database-Driven Web Server for Terpenome Research.

Tao Zeng1, Zhihong Liu2, Jingyuan Zhuang1, Yitao Jiang1, Wengan He1, Hongjuan Diao1, Nan Lv1, Yongxing Jian1, Danhong Liang1, Yufan Qiu1, Rong Zhang1, Fan Zhang1, Xiaowen Tang1, Ruibo Wu1.   

Abstract

Natural products are the major resource of drug discovery, and terpenoids represent the largest family of natural products. Terpenome is defined as all terpenoid-like and terpenoid-derived natural compounds, including the terpenoids, steroids, and their derivatives. Herein, aiming to navigate the chemical and biological space of terpenome, the first comprehensive database dedicated to terpenome research has been developed by collecting over 110 000 terpenome molecules from various resources, distributed in 14 351 species, belonging to 1109 families, and showing activity against 1366 biological targets. Much of the publically available information or computationally predicted properties for each terpenome molecule is annotated and integrated into TeroKit (http://terokit.qmclab.com/), serving as free Web server for academic use. Moreover, several practical toolkits, such as target profiling and conformer generation modules, are also implemented to facilitate the drug discovery of terpenome.

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Year:  2020        PMID: 32286817     DOI: 10.1021/acs.jcim.0c00141

Source DB:  PubMed          Journal:  J Chem Inf Model        ISSN: 1549-9596            Impact factor:   4.956


  7 in total

Review 1.  Synthetic biology, combinatorial biosynthesis, and chemo‑enzymatic synthesis of isoprenoids.

Authors:  Alexandra A Malico; Miles A Calzini; Anuran K Gayen; Gavin J Williams
Journal:  J Ind Microbiol Biotechnol       Date:  2020-09-03       Impact factor: 3.346

Review 2.  Protein engineering for natural product biosynthesis and synthetic biology applications.

Authors:  Miles A Calzini; Alexandra A Malico; Melissa M Mitchler; Gavin J Williams
Journal:  Protein Eng Des Sel       Date:  2021-02-15       Impact factor: 1.952

Review 3.  Bacterial terpenome.

Authors:  Jeffrey D Rudolf; Tyler A Alsup; Baofu Xu; Zining Li
Journal:  Nat Prod Rep       Date:  2021-05-26       Impact factor: 15.111

4.  The Biosynthesis and Transport of Ophiobolins in Aspergillus ustus 094102.

Authors:  Jingjing Yan; Jiamin Pang; Jianjia Liang; Wulin Yu; Xuequn Liao; Ayikaimaier Aobulikasimu; Xinrui Yi; Yapeng Yin; Zixin Deng; Kui Hong
Journal:  Int J Mol Sci       Date:  2022-02-08       Impact factor: 5.923

Review 5.  Translational Informatics for Natural Products as Antidepressant Agents.

Authors:  Rajeev K Singla; Shikha Joon; Li Shen; Bairong Shen
Journal:  Front Cell Dev Biol       Date:  2022-01-20

Review 6.  The Combination of Tradition and Future: Data-Driven Natural-Product-Based Treatments for Parkinson's Disease.

Authors:  Zhijun Miao; Jinwei Bai; Li Shen; Rajeev K Singla
Journal:  Evid Based Complement Alternat Med       Date:  2021-07-14       Impact factor: 2.629

Review 7.  Plasticity engineering of plant monoterpene synthases and application for microbial production of monoterpenoids.

Authors:  Dengwei Lei; Zetian Qiu; Jianjun Qiao; Guang-Rong Zhao
Journal:  Biotechnol Biofuels       Date:  2021-06-30       Impact factor: 6.040

  7 in total

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