| Literature DB >> 32267022 |
Yu Lu1, Jie Zeng1, Shi Yang1, Zuojian Hu2, Limin Li3, Hongli Yu1, Xue Qin2.
Abstract
BACKGROUND: Genetic polymorphisms in the CXCL2 may participate in the progress of HBV-related HCC. However, no researches have evaluated the association between them.Entities:
Keywords: CXCL2; chronic hepatitis B; gene polymorphism; hepatocellular carcinoma; liver cirrhosis
Mesh:
Substances:
Year: 2020 PMID: 32267022 PMCID: PMC7439333 DOI: 10.1002/jcla.23310
Source DB: PubMed Journal: J Clin Lab Anal ISSN: 0887-8013 Impact factor: 2.352
Basic characteristic of the study population
| Variable | Healthy controls (n = 147) | CHB patients (n = 138) |
| LC patients (n = 137) |
| HCC patients (n = 150) |
|
|---|---|---|---|---|---|---|---|
| Age (y, mean ± SD) | 48.23 ± 11.37 | 39.71 ± 11.69 | <.001 | 47.04 ± 11.30 | <.371 | 50.53 ± 10.35 | .076 |
| Gender, N (%) | |||||||
| Male | 121 (0.82) | 108 (0.78) | .390 | 108 (0.79) | .458 | 127 (0.85) | .585 |
| Female | 26 (0.18) | 30 (0.22) | 29 (0.21) | 23 (0.15) | |||
Genotype and allele frequencies of rs9131 and rs3806792 SNPs between HBV‐related patients and healthy controls
| Polymorphisms | Healthy controls, N = 147 |
CHB patients N = 138 | LC patients, N = 137 | HCC patients, N = 150 | CHB patients vs. Healthy controls | LC patients vs Healthy controls | HCC patients vs Healthy controls |
|---|---|---|---|---|---|---|---|
| OR (95% CI) | |||||||
| rs9131 | |||||||
| CC | 77 (0.52) | 70 (0.51) | 67 (0.49) | 69 (0.46) | 1.00 | 1.00 | 1.00 |
| CT | 57 (0.39) | 60 (0.43) | 55 (0.40) | 65 (0.43) | 1.14 (0.68‐1.92) | 1.10 (0.67‐181) | 1.26 (0.78‐2.05) |
| TT | 13 (0.09) | 8 (0.06) | 15 (0.11) | 16 (0.11) | 0.84 (0.31‐2.23) | 1.33 (0.59‐3.00) | 1.36 (0.61‐3.05) |
| Dominant model | 70 (0.48) | 68 (0.49) | 70 (0.51) | 81 (0.54) | 1.09 (0.66‐1.79) | 1.14 (0.72‐1.82) | 1.28 (0.81‐2.02) |
| Recessive model | 134 (0.91) | 130 (0.94) | 122 (0.89) | 134 (0.89) | 0.79 (0.30‐2.04) | 1.28 (0.58‐2.80) | 1.23 (0.57‐2.66) |
| C allele | 211 (0.72) | 200 (0.73) | 189 (0.69) | 203 (0.68) | 1.00 | 1.00 | 1.00 |
| T allele | 83 (0.28) | 76 (0.28) | 85 (0.31) | 97 (0.32) | 1.01 (0.69‐1.49) | 1.14 (0.79‐1.64) | 1.21 (0.85‐1.72) |
|
| .601 | .293 | .468 | .905 | |||
| rs3806792 | |||||||
| TT | 76 (0.52) | 70 (0.51) | 67 (0.49) | 69 (0.46) | 1.00 | 1.00 | 1.00 |
| TC | 53 (0.36) | 59 (0.43) | 55 (0.40) | 64 (0.43) | 1.21 (0.71‐2.05) | 1.17 (0.71‐1.94) | 1.31 (0.80‐2.14) |
| CC | 18 (0.12) | 9 (0.07) | 15 (0.11) | 17 (0.11) | 0.61 (0.25‐1.50) | 0.94 (0.44‐2.01) | 1.06 (0.50‐2.22) |
| Dominant model | 71 (0.48) | 68 (0.49) | 70 (0.51) | 81 (0.54) | 1.06 (0.64‐1.74) | 1.11 (0.70‐1.78) | 1.25 (0.79‐1.97) |
| Recessive model | 129 (0.88) | 129 (0.93) | 122 (0.89) | 133 (0.89) | 0.56 (0.23‐1.33) | 0.88 (0.42‐1.82) | 0.936 (0.46‐1.90) |
| T allele | 205 (0.70) | 199 (0.72) | 189 (0.69) | 202 (0.74) | 1.00 | 1.00 | 1.00 |
| C allele | 89 (0.30) | 77 (0.28) | 85 (0.31) | 98 (0.36) | 0.92 (0.63‐1.35) | 1.03 (0.72‐1.47) | 1.12 (0.79‐1.58) |
|
| .077 | .461 | .468 | .712 | |||
Adjusted by age and gender.
Dominant model: TT + CT vs CC.
Recessive model: TT vs CT + CC.
Dominant model: CT + CC vs TT.
Recessive model: CC vs TT + CT.
Genotype and allele frequencies of rs9131 and rs3806792 SNPs between HBV‐related patients and healthy controls in males
| Polymorphisms | Healthy controls, N = 121 |
CHB patients N = 108 | LC patients, N = 108 | HCC patients, N = 127 | CHB patients vs Healthy controls | LC patients vs Healthy controls | HCC patients vs Healthy controls |
|---|---|---|---|---|---|---|---|
| OR (95% CI) | |||||||
| rs9131 | |||||||
| CC | 63 (0.52) | 54 (0.50) | 52 (0.48) | 58 (0.46) | 1.00 | 1.00 | 1.00 |
| CT | 47 (0.39) | 47 (0.44) | 46 (0.43) | 54 (0.43) | 1.22 (0.66‐2.27) | 1.08 (0.62‐1.90) | 1.25 (0.74‐2.13) |
| TT | 11 (0.09) | 7 (0.06) | 10 (0.09) | 15 (0.12) | 1.04 (0.34‐3.19) | 1.09 (0.42‐2.81) | 1.50 (0.63‐3.53) |
| Dominant model | 58 (0.48) | 54 (0.50) | 56 (0.52) | 69 (0.54) | 1.19 (0.66‐2.16) | 1.09 (0.64‐1.85) | 1.30 (0.79‐2.14) |
| Recessive model | 110 (0.91) | 101 ((0.94) | 98 (0.91) | 112 (0.88) | 0.95 (0.32‐2.78) | 1.05 (0.42‐2.62) | 1.35 (0.59‐3.07) |
| C allele | 173 (0.71) | 155 (0.72) | 150 (0.69) | 170 (0.67) | 1.00 | 1.00 | 1.00 |
| T allele | 69 (0.29) | 61 (0.28) | 66 (0.31) | 84 (0.33) | 1.10 (0.70‐1.74) | 1.06 (0.70‐1.60) | 1.25 (0.85‐1.83) |
| rs3806792 | |||||||
| TT | 62 (0.51) | 54 (0.50) | 52 (0.48) | 58 (0.46) | 1.00 | 1.00 | 1.00 |
| TC | 44 (0.36) | 46 (0.43) | 46 (0.43) | 53 (0.42) | 1.28 (0.68‐2.39) | 1.14 (0.65‐2.02) | 1.29 (0.75‐2.21) |
| CC | 15 (0.12) | 8 (0.07) | 10 (0.09) | 16 (0.13) | 0.78 (0.28‐2.14) | 0.77 (0.31‐1.87) | 1.17 (0.53‐2.57) |
| Dominant model | 59 (0.49) | 54 (0.50) | 56 (0.52) | 69 (0.54) | 1.15 (0.64‐2.08) | 1.05 (0.62‐1.78) | 1.26 (0.76‐2.07) |
| Recessive model | 106 (0.88) | 100 (0.93) | 98 (0.91) | 111 (0.87) | 0.69 (0.26‐1.83) | 0.72 (0.31‐1.70) | 1.04 (0.49‐2.21) |
| T allele | 168 (0.69) | 154 (0.71) | 150 (0.69) | 169 (0.67) | 1.00 | 1.00 | 1.00 |
| C allele | 74 (0.31) | 62 (0.29) | 66 (0.31) | 85 (0.33) | 1.00 (0.64‐1.57) | 0.95 (0.64‐1.43) | 1.15 (0.79‐1.68) |
Adjusted by age.
Dominant model: TT + CT vs CC.
Recessive model: TT vs CT + CC.
Dominant model: CT + CC vs TT.
Recessive model: CC vs TT + CT.
Comparison of genotype and allele frequencies in the healthy control subjects of our study and that from the 1000 genomes
| Polymorphisms | Samples, N | Genotype frequency, n |
| Alleles frequency, n |
| |||
|---|---|---|---|---|---|---|---|---|
| CC | CT | TT | C | T | ||||
| rs9131 | ||||||||
| Present study | 147 | 77 (0.52) | 57 (0.39) | 13 (0.09) | 211 (0.72) | 83 (0.28) | ||
| CEU | 99 | 12 (0.12) | 49 (0.49) | 38 (0.38) |
| 73 (0.37) | 125 (0.63) |
|
| HCB | 103 | 45 (0.44) | 46 (0.45) | 12 (0.12) | .382 | 136 (0.66) | 70 (0.34) | .170 |
| GIH | 103 | 11 (0.11) | 57 (0.55) | 35 (0.34) |
| 79 (0.38) | 127 (0.62) |
|
| JPT | 104 | 26 (0.25) | 57 (0.55) | 21 (0.20) |
| 109 (0.52) | 99 (0.48) |
|
| YRI | 108 | 80 (0.74) | 24 (0.22) | 4 (0.04) |
| 184 (0.85) | 32 (0.15) |
|
| rs3806792 | ||||||||
| Present study | 147 | 18 (0.12) | 53 (0.36) | 76 (0.52) | 89 (0.30) | 205 (0.70) | ||
| CEU | 99 | 39 (0.39) | 49 (0.49) | 11 (0.11) |
| 127 (0.64) | 71 (0.36) |
|
| HCB | 103 | 13 (0.13) | 45 (0.44) | 45 (0.44) | .425 | 71 (0.34) | 135 (0.66) | .322 |
| GIH | 103 | 36 (0.35) | 59 (0.57) | 8 (0.08) |
| 131 (0.64) | 75 (0.36) |
|
| JPT | 104 | 21 (0.20) | 57 (0.55) | 26 (0.25) |
| 99 (0.48) | 109 (0.52) |
|
| YRI | 108 | 4 (0.04) | 24 (0.22) | 80 (0.74) |
| 32 (0.15) | 184 (0.85) |
|
Abbreviations: CEU, Utah residents with northern and western European ancestry; GIH, Gujarati Indian from Houston, Texas; HCB, Han Chinese in Beijing, China; JPT, Japanese in Tokyo, Japan; YRI, Yoruba in Ibadan, Nigeria.
Bold indicates P<.001.
Frequencies of the haplotypes formed by rs9131 and rs3806792 SNPs in HBV‐related patients and healthy controls
| Haplotype | Healthy control | CHB patients | OR (95% CI) |
| LC patients | OR (95% CI) | p | HCC patients | OR (95% CI) |
|
|---|---|---|---|---|---|---|---|---|---|---|
| CC | 204 (0.69) | 199 (0.72) | 1.05 (0.73‐1.52) | .79 | 189 (0.69) | 0.89 (0.62‐1.28) | 0.54 | 202 (0.67) | 0.84 (0.59‐1.19) | .32 |
| CT | 7 (0.02) | 1 (0.004) | – | – | 0 | – | 1 (0.003) | |||
| TC | 1 (0.003) | 0 (0.00) | – | – | 0 | – | 0 (0.00) | |||
| TT | 82 (0.28) | 76 (0.28) | 0.95 (0.66‐1.37) | .79 | 85 (0.31) | 1.19 (0.78‐1.61) | 0.54 | 97 (0.32) | 1.20 (0.84‐1.70) | .32 |