Literature DB >> 32265576

Nonparametric Bayes Models of Fiber Curves Connecting Brain Regions.

Zhengwu Zhang1, Maxime Descoteaux2, David B Dunson3.   

Abstract

In studying structural inter-connections in the human brain, it is common to first estimate fiber bundles connecting different regions relying on diffusion MRI. These fiber bundles act as highways for neural activity. Current statistical methods reduce the rich information into an adjacency matrix, with the elements containing a count of fibers or a mean diffusion feature along the fibers. The goal of this article is to avoid discarding the rich geometric information of fibers, developing flexible models for characterizing the population distribution of fibers between brain regions of interest within and across different individuals. We start by decomposing each fiber into a rotation matrix, shape and translation from a global reference curve. These components are viewed as data lying on a product space composed of different Euclidean spaces and manifolds. To nonparametrically model the distribution within and across individuals, we rely on a hierarchical mixture of product kernels specific to the component spaces. Taking a Bayesian approach to inference, we develop efficient methods for posterior sampling. The approach automatically produces clusters of fibers within and across individuals. Applying the method to Human Connectome Project data, we find interesting relationships between brain fiber geometry and reading ability. Supplementary materials for this article, including a standardized description of the materials available for reproducing the work, are available as an online supplement.

Entities:  

Keywords:  Brain connectomics; Connectome geometry; Functional data analysis; Mixture model; Shape analysis

Year:  2019        PMID: 32265576      PMCID: PMC7138131          DOI: 10.1080/01621459.2019.1574582

Source DB:  PubMed          Journal:  J Am Stat Assoc        ISSN: 0162-1459            Impact factor:   5.033


  30 in total

1.  Shape Analysis of Elastic Curves in Euclidean Spaces.

Authors:  Anuj Srivastava; Eric Klassen; Shantanu H Joshi; Ian H Jermyn
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2010-10-14       Impact factor: 6.226

2.  Emotion regulation and trait anxiety are predicted by the microstructure of fibers between amygdala and prefrontal cortex.

Authors:  Annuschka Salima Eden; Jan Schreiber; Alfred Anwander; Katharina Keuper; Inga Laeger; Peter Zwanzger; Pienie Zwitserlood; Harald Kugel; Christian Dobel
Journal:  J Neurosci       Date:  2015-04-15       Impact factor: 6.167

3.  Robust and efficient linear registration of white-matter fascicles in the space of streamlines.

Authors:  Eleftherios Garyfallidis; Omar Ocegueda; Demian Wassermann; Maxime Descoteaux
Journal:  Neuroimage       Date:  2015-05-16       Impact factor: 6.556

Review 4.  Graph analysis of the human connectome: promise, progress, and pitfalls.

Authors:  Alex Fornito; Andrew Zalesky; Michael Breakspear
Journal:  Neuroimage       Date:  2013-04-30       Impact factor: 6.556

5.  Characteristics and variability of structural networks derived from diffusion tensor imaging.

Authors:  Hu Cheng; Yang Wang; Jinhua Sheng; William G Kronenberger; Vincent P Mathews; Tom A Hummer; Andrew J Saykin
Journal:  Neuroimage       Date:  2012-03-17       Impact factor: 6.556

6.  Bayesian Multiscale Modeling of Closed Curves in Point Clouds.

Authors:  Kelvin Gu; Debdeep Pati; David B Dunson
Journal:  J Am Stat Assoc       Date:  2014-10       Impact factor: 5.033

Review 7.  The WU-Minn Human Connectome Project: an overview.

Authors:  David C Van Essen; Stephen M Smith; Deanna M Barch; Timothy E J Behrens; Essa Yacoub; Kamil Ugurbil
Journal:  Neuroimage       Date:  2013-05-16       Impact factor: 6.556

8.  The shape of the ACC contributes to cognitive control efficiency in preschoolers.

Authors:  Arnaud Cachia; Grégoire Borst; Julie Vidal; Clara Fischer; Arlette Pineau; Jean-François Mangin; Olivier Houdé
Journal:  J Cogn Neurosci       Date:  2013-08-05       Impact factor: 3.225

9.  Brain size and folding of the human cerebral cortex.

Authors:  Roberto Toro; Michel Perron; Bruce Pike; Louis Richer; Suzanne Veillette; Zdenka Pausova; Tomás Paus
Journal:  Cereb Cortex       Date:  2008-02-10       Impact factor: 5.357

10.  A multi-modal parcellation of human cerebral cortex.

Authors:  Timothy S Coalson; Emma C Robinson; Carl D Hacker; Matthew F Glasser; John Harwell; Essa Yacoub; Kamil Ugurbil; Jesper Andersson; Christian F Beckmann; Mark Jenkinson; Stephen M Smith; David C Van Essen
Journal:  Nature       Date:  2016-07-20       Impact factor: 49.962

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