Literature DB >> 32253339

Pyridoxal Reductase, PdxI, Is Critical for Salvage of Pyridoxal in Escherichia coli.

Tomokazu Ito1,2, Diana M Downs3.   

Abstract

Pyridoxal 5'-phosphate (PLP) is the biologically active form of vitamin B6 and an essential cofactor in all organisms. In Escherichia coli, PLP is synthesized via the deoxyxylulose 5-phosphate (DXP)-dependent pathway that includes seven enzymatic steps and generates pyridoxine 5'-phosphate as an intermediate. Additionally, E. coli is able to salvage pyridoxal, pyridoxine, and pyridoxamine B6 vitamers to produce PLP using kinases PdxK/PdxY and pyridox(am)ine phosphate oxidase (PdxH). We found that E. coli strains blocked in PLP synthesis prior to the formation of pyridoxine 5'-phosphate (PNP) required significantly less exogenous pyridoxal (PL) than strains lacking pdxH and identified the conversion of PL to pyridoxine (PN) during cultivation to be the cause. Our data showed that PdxI, shown to have PL reductase activity in vitro, was required for the efficient salvage of PL in E. coli The pdxI+ E. coli strains converted exogenous PL to PN during growth, while pdxI mutants did not. In total, the data herein demonstrated that PdxI is a critical enzyme in the salvage of PL by E. coli IMPORTANCE The biosynthetic pathway of pyridoxal 5'-phosphate (PLP) has extensively been studied in Escherichia coli, yet limited information is available about the vitamin B6 salvage pathway. We show that the protein PdxI (YdbC) is the primary pyridoxal (PL) reductase in E. coli and is involved in the salvage of PL. The orthologs of PdxI occur in a wide range of bacteria and plants, suggesting that PL reductase in the B6 salvage pathway is more widely distributed than previously expected.
Copyright © 2020 American Society for Microbiology.

Entities:  

Keywords:  Escherichia colizzm321990; pyridoxal phosphate; pyridoxal reductase; pyridoxal salvage; pyridoxine; vitamin B6zzm321990

Year:  2020        PMID: 32253339      PMCID: PMC7253606          DOI: 10.1128/JB.00056-20

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  32 in total

1.  Bacillus subtilis GabR, a protein with DNA-binding and aminotransferase domains, is a PLP-dependent transcriptional regulator.

Authors:  Boris R Belitsky
Journal:  J Mol Biol       Date:  2004-07-16       Impact factor: 5.469

2.  A new member of MocR/GabR-type PLP-binding regulator of D-alanyl-D-alanine ligase in Brevibacillus brevis.

Authors:  Takashi Takenaka; Tomokazu Ito; Ikuko Miyahara; Hisashi Hemmi; Tohru Yoshimura
Journal:  FEBS J       Date:  2015-09-08       Impact factor: 5.542

3.  Role of chemistry versus substrate binding in recruiting promiscuous enzyme functions.

Authors:  Olga Khersonsky; Sergey Malitsky; Ilana Rogachev; Dan S Tawfik
Journal:  Biochemistry       Date:  2011-03-08       Impact factor: 3.162

Review 4.  Controlling reaction specificity in pyridoxal phosphate enzymes.

Authors:  Michael D Toney
Journal:  Biochim Biophys Acta       Date:  2011-06-06

5.  Conserved Pyridoxal 5'-Phosphate-Binding Protein YggS Impacts Amino Acid Metabolism through Pyridoxine 5'-Phosphate in Escherichia coli.

Authors:  Tomokazu Ito; Kana Yamamoto; Ran Hori; Ayako Yamauchi; Diana M Downs; Hisashi Hemmi; Tohru Yoshimura
Journal:  Appl Environ Microbiol       Date:  2019-05-16       Impact factor: 4.792

6.  Identification and function of the pdxY gene, which encodes a novel pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate biosynthesis in Escherichia coli K-12.

Authors:  Y Yang; H C Tsui; T K Man; M E Winkler
Journal:  J Bacteriol       Date:  1998-04       Impact factor: 3.490

Review 7.  Two independent routes of de novo vitamin B6 biosynthesis: not that different after all.

Authors:  Teresa B Fitzpatrick; Nikolaus Amrhein; Barbara Kappes; Peter Macheroux; Ivo Tews; Thomas Raschle
Journal:  Biochem J       Date:  2007-10-01       Impact factor: 3.857

8.  Inhibition of glycine cleavage system by pyridoxine 5'-phosphate causes synthetic lethality in glyA yggS and serA yggS in Escherichia coli.

Authors:  Tomokazu Ito; Ran Hori; Hisashi Hemmi; Diana M Downs; Tohru Yoshimura
Journal:  Mol Microbiol       Date:  2019-11-24       Impact factor: 3.501

9.  Crystal structure of the PdxY Protein from Escherichia coli.

Authors:  Martin K Safo; Faik N Musayev; Sharyn Hunt; Martino L di Salvo; Neel Scarsdale; Verne Schirch
Journal:  J Bacteriol       Date:  2004-12       Impact factor: 3.490

10.  Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection.

Authors:  Tomoya Baba; Takeshi Ara; Miki Hasegawa; Yuki Takai; Yoshiko Okumura; Miki Baba; Kirill A Datsenko; Masaru Tomita; Barry L Wanner; Hirotada Mori
Journal:  Mol Syst Biol       Date:  2006-02-21       Impact factor: 11.429

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  6 in total

1.  The Role of YggS in Vitamin B6 Homeostasis in Salmonella enterica Is Informed by Heterologous Expression of Yeast SNZ3.

Authors:  Huong N Vu; Tomokazu Ito; Diana M Downs
Journal:  J Bacteriol       Date:  2020-10-22       Impact factor: 3.490

2.  Mechanism of Pyridoxine 5'-Phosphate Accumulation in Pyridoxal 5'-Phosphate-Binding Protein Deficiency.

Authors:  Tomokazu Ito; Honoka Ogawa; Hisashi Hemmi; Diana M Downs; Tohru Yoshimura
Journal:  J Bacteriol       Date:  2022-01-03       Impact factor: 3.476

3.  An Unexpected Role for the Periplasmic Phosphatase PhoN in the Salvage of B6 Vitamers in Salmonella enterica.

Authors:  Huong N Vu; Diana M Downs
Journal:  Appl Environ Microbiol       Date:  2021-01-15       Impact factor: 4.792

Review 4.  Knowns and Unknowns of Vitamin B6 Metabolism in Escherichia coli.

Authors:  Angela Tramonti; Caterina Nardella; Martino L di Salvo; Anna Barile; Federico D'Alessio; Valérie de Crécy-Lagard; Roberto Contestabile
Journal:  EcoSal Plus       Date:  2021-04

Review 5.  Underground metabolism facilitates the evolution of novel pathways for vitamin B6 biosynthesis.

Authors:  Björn Richts; Fabian M Commichau
Journal:  Appl Microbiol Biotechnol       Date:  2021-03-04       Impact factor: 4.813

6.  Production of (2S)-sakuranetin from (2S)-naringenin in Escherichia coli by strengthening methylation process and cell resistance.

Authors:  Qiumeng Sun; Song Gao; Shiqin Yu; Pu Zheng; Jingwen Zhou
Journal:  Synth Syst Biotechnol       Date:  2022-08-03
  6 in total

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