Literature DB >> 32246942

Cell Type-Specific Intralocus Interactions Reveal Oligodendrocyte Mechanisms in MS.

Daniel C Factor1, Anna M Barbeau2, Kevin C Allan1, Lucille R Hu1, Mayur Madhavan1, An T Hoang2, Kathryn E A Hazel2, Parker A Hall3, Sagar Nisraiyya2, Fadi J Najm1, Tyler E Miller4, Zachary S Nevin1, Robert T Karl1, Bruna R Lima2, Yanwei Song2, Alexandra G Sibert2, Gursimran K Dhillon1, Christina Volsko5, Cynthia F Bartels1, Drew J Adams1, Ranjan Dutta5, Michael D Gallagher2, William Phu3, Alexey Kozlenkov6, Stella Dracheva6, Peter C Scacheri7, Paul J Tesar1, Olivia Corradin8.   

Abstract

Multiple sclerosis (MS) is an autoimmune disease characterized by attack on oligodendrocytes within the central nervous system (CNS). Despite widespread use of immunomodulatory therapies, patients may still face progressive disability because of failure of myelin regeneration and loss of neurons, suggesting additional cellular pathologies. Here, we describe a general approach for identifying specific cell types in which a disease allele exerts a pathogenic effect. Applying this approach to MS risk loci, we pinpoint likely pathogenic cell types for 70%. In addition to T cell loci, we unexpectedly identified myeloid- and CNS-specific risk loci, including two sites that dysregulate transcriptional pause release in oligodendrocytes. Functional studies demonstrated inhibition of transcriptional elongation is a dominant pathway blocking oligodendrocyte maturation. Furthermore, pause release factors are frequently dysregulated in MS brain tissue. These data implicate cell-intrinsic aberrations outside of the immune system and suggest new avenues for therapeutic development. VIDEO ABSTRACT.
Copyright © 2020 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  GWAS; cell type; epigenomics; genetic risk; multiple sclerosis; oligodendrocytes; outside variants; population genetics; remyelination; transcriptional pause release

Mesh:

Year:  2020        PMID: 32246942      PMCID: PMC7426147          DOI: 10.1016/j.cell.2020.03.002

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  83 in total

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2.  Modeling the Mutational and Phenotypic Landscapes of Pelizaeus-Merzbacher Disease with Human iPSC-Derived Oligodendrocytes.

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3.  Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.

Authors:  Nikolaos A Patsopoulos; Federica Esposito; Joachim Reischl; Stephan Lehr; David Bauer; Jürgen Heubach; Rupert Sandbrink; Christoph Pohl; Gilles Edan; Ludwig Kappos; David Miller; Javier Montalbán; Chris H Polman; Mark S Freedman; Hans-Peter Hartung; Barry G W Arnason; Giancarlo Comi; Stuart Cook; Massimo Filippi; Douglas S Goodin; Douglas Jeffery; Paul O'Connor; George C Ebers; Dawn Langdon; Anthony T Reder; Anthony Traboulsee; Frauke Zipp; Sebastian Schimrigk; Jan Hillert; Melanie Bahlo; David R Booth; Simon Broadley; Matthew A Brown; Brian L Browning; Sharon R Browning; Helmut Butzkueven; William M Carroll; Caron Chapman; Simon J Foote; Lyn Griffiths; Allan G Kermode; Trevor J Kilpatrick; Jeanette Lechner-Scott; Mark Marriott; Deborah Mason; Pablo Moscato; Robert N Heard; Michael P Pender; Victoria M Perreau; Devindri Perera; Justin P Rubio; Rodney J Scott; Mark Slee; Jim Stankovich; Graeme J Stewart; Bruce V Taylor; Niall Tubridy; Ernest Willoughby; James Wiley; Paul Matthews; Filippo M Boneschi; Alastair Compston; Jonathan Haines; Stephen L Hauser; Jacob McCauley; Adrian Ivinson; Jorge R Oksenberg; Margaret Pericak-Vance; Stephen J Sawcer; Philip L De Jager; David A Hafler; Paul I W de Bakker
Journal:  Ann Neurol       Date:  2011-12       Impact factor: 10.422

Review 4.  Immunopathology of multiple sclerosis.

Authors:  Calliope A Dendrou; Lars Fugger; Manuel A Friese
Journal:  Nat Rev Immunol       Date:  2015-08-07       Impact factor: 53.106

Review 5.  Update on inflammation, neurodegeneration, and immunoregulation in multiple sclerosis: therapeutic implications.

Authors:  Jeffrey L Bennett; Olaf Stüve
Journal:  Clin Neuropharmacol       Date:  2009 May-Jun       Impact factor: 1.592

6.  BLUEPRINT to decode the epigenetic signature written in blood.

Authors:  David Adams; Lucia Altucci; Stylianos E Antonarakis; Juan Ballesteros; Stephan Beck; Adrian Bird; Christoph Bock; Bernhard Boehm; Elias Campo; Andrea Caricasole; Fredrik Dahl; Emmanouil T Dermitzakis; Tariq Enver; Manel Esteller; Xavier Estivill; Anne Ferguson-Smith; Jude Fitzgibbon; Paul Flicek; Claudia Giehl; Thomas Graf; Frank Grosveld; Roderic Guigo; Ivo Gut; Kristian Helin; Jonas Jarvius; Ralf Küppers; Hans Lehrach; Thomas Lengauer; Åke Lernmark; David Leslie; Markus Loeffler; Elizabeth Macintyre; Antonello Mai; Joost H A Martens; Saverio Minucci; Willem H Ouwehand; Pier Giuseppe Pelicci; Hèléne Pendeville; Bo Porse; Vardhman Rakyan; Wolf Reik; Martin Schrappe; Dirk Schübeler; Martin Seifert; Reiner Siebert; David Simmons; Nicole Soranzo; Salvatore Spicuglia; Michael Stratton; Hendrik G Stunnenberg; Amos Tanay; David Torrents; Alfonso Valencia; Edo Vellenga; Martin Vingron; Jörn Walter; Spike Willcocks
Journal:  Nat Biotechnol       Date:  2012-03-07       Impact factor: 54.908

Review 7.  Therapies for multiple sclerosis: translational achievements and outstanding needs.

Authors:  Aiden Haghikia; Reinhard Hohlfeld; Ralf Gold; Lars Fugger
Journal:  Trends Mol Med       Date:  2013-04-10       Impact factor: 11.951

8.  Impact of artifact removal on ChIP quality metrics in ChIP-seq and ChIP-exo data.

Authors:  Thomas S Carroll; Ziwei Liang; Rafik Salama; Rory Stark; Ines de Santiago
Journal:  Front Genet       Date:  2014-04-10       Impact factor: 4.599

9.  Genetic Drivers of Epigenetic and Transcriptional Variation in Human Immune Cells.

Authors:  Lu Chen; Bing Ge; Francesco Paolo Casale; Louella Vasquez; Tony Kwan; Diego Garrido-Martín; Stephen Watt; Ying Yan; Kousik Kundu; Simone Ecker; Avik Datta; David Richardson; Frances Burden; Daniel Mead; Alice L Mann; Jose Maria Fernandez; Sophia Rowlston; Steven P Wilder; Samantha Farrow; Xiaojian Shao; John J Lambourne; Adriana Redensek; Cornelis A Albers; Vyacheslav Amstislavskiy; Sofie Ashford; Kim Berentsen; Lorenzo Bomba; Guillaume Bourque; David Bujold; Stephan Busche; Maxime Caron; Shu-Huang Chen; Warren Cheung; Oliver Delaneau; Emmanouil T Dermitzakis; Heather Elding; Irina Colgiu; Frederik O Bagger; Paul Flicek; Ehsan Habibi; Valentina Iotchkova; Eva Janssen-Megens; Bowon Kim; Hans Lehrach; Ernesto Lowy; Amit Mandoli; Filomena Matarese; Matthew T Maurano; John A Morris; Vera Pancaldi; Farzin Pourfarzad; Karola Rehnstrom; Augusto Rendon; Thomas Risch; Nilofar Sharifi; Marie-Michelle Simon; Marc Sultan; Alfonso Valencia; Klaudia Walter; Shuang-Yin Wang; Mattia Frontini; Stylianos E Antonarakis; Laura Clarke; Marie-Laure Yaspo; Stephan Beck; Roderic Guigo; Daniel Rico; Joost H A Martens; Willem H Ouwehand; Taco W Kuijpers; Dirk S Paul; Hendrik G Stunnenberg; Oliver Stegle; Kate Downes; Tomi Pastinen; Nicole Soranzo
Journal:  Cell       Date:  2016-11-17       Impact factor: 41.582

10.  Evaluation of off-target and on-target scoring algorithms and integration into the guide RNA selection tool CRISPOR.

Authors:  Maximilian Haeussler; Kai Schönig; Hélène Eckert; Alexis Eschstruth; Joffrey Mianné; Jean-Baptiste Renaud; Sylvie Schneider-Maunoury; Alena Shkumatava; Lydia Teboul; Jim Kent; Jean-Stephane Joly; Jean-Paul Concordet
Journal:  Genome Biol       Date:  2016-07-05       Impact factor: 13.583

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  12 in total

1.  Lesion features on magnetic resonance imaging discriminate multiple sclerosis patients.

Authors:  Sandra M Hurtado Rúa; Ulrike W Kaunzner; Sneha Pandya; Elizabeth Sweeney; Ceren Tozlu; Amy Kuceyeski; Thanh D Nguyen; Susan A Gauthier
Journal:  Eur J Neurol       Date:  2021-08-29       Impact factor: 6.089

2.  Multiple sclerosis genetic and non-genetic factors interact through the transient transcriptome.

Authors:  Renato Umeton; Gianmarco Bellucci; Rachele Bigi; Silvia Romano; Maria Chiara Buscarinu; Roberta Reniè; Virginia Rinaldi; Raffaella Pizzolato Umeton; Emanuele Morena; Carmela Romano; Rosella Mechelli; Marco Salvetti; Giovanni Ristori
Journal:  Sci Rep       Date:  2022-05-09       Impact factor: 4.996

Review 3.  Multiple Sclerosis Phenotypes as a Continuum: The Role of Neurologic Reserve.

Authors:  Timothy L Vollmer; Kavita V Nair; Ian M Williams; Enrique Alvarez
Journal:  Neurol Clin Pract       Date:  2021-08

Review 4.  Diversity and Function of Glial Cell Types in Multiple Sclerosis.

Authors:  Lucas Schirmer; Dorothy P Schafer; Theresa Bartels; David H Rowitch; Peter A Calabresi
Journal:  Trends Immunol       Date:  2021-02-13       Impact factor: 16.687

5.  Multiple sclerosis iPS-derived oligodendroglia conserve their properties to functionally interact with axons and glia in vivo.

Authors:  Sabah Mozafari; Laura Starost; Blandine Manot-Saillet; Beatriz Garcia-Diaz; Yu Kang T Xu; Delphine Roussel; Marion J F Levy; Linda Ottoboni; Kee-Pyo Kim; Hans R Schöler; Timothy E Kennedy; Jack P Antel; Gianvito Martino; Maria Cecilia Angulo; Tanja Kuhlmann; Anne Baron-Van Evercooren
Journal:  Sci Adv       Date:  2020-12-04       Impact factor: 14.136

Review 6.  The β-Cell Genomic Landscape in T1D: Implications for Disease Pathogenesis.

Authors:  Mireia Ramos-Rodríguez; Beatriz Pérez-González; Lorenzo Pasquali
Journal:  Curr Diab Rep       Date:  2021-01-02       Impact factor: 4.810

7.  Editorial: "Inside-Out" vs "Outside-In" Paradigms in Multiple Sclerosis Etiopathogenesis.

Authors:  Antonio Luchicchi; Paolo Preziosa; Bert 't Hart
Journal:  Front Cell Neurosci       Date:  2021-03-01       Impact factor: 5.505

Review 8.  High-Resolution Transcriptomic and Proteomic Profiling of Heterogeneity of Brain-Derived Microglia in Multiple Sclerosis.

Authors:  Anneke Miedema; Marion H C Wijering; Bart J L Eggen; Susanne M Kooistra
Journal:  Front Mol Neurosci       Date:  2020-10-22       Impact factor: 5.639

9.  Oligodendrocyte-specific Argonaute profiling identifies microRNAs associated with experimental autoimmune encephalomyelitis.

Authors:  Qin Ma; Atsuko Matsunaga; Brenda Ho; Jorge R Oksenberg; Alessandro Didonna
Journal:  J Neuroinflammation       Date:  2020-10-12       Impact factor: 8.322

10.  Sustained ErbB Activation Causes Demyelination and Hypomyelination by Driving Necroptosis of Mature Oligodendrocytes and Apoptosis of Oligodendrocyte Precursor Cells.

Authors:  Xu Hu; Guanxiu Xiao; Li He; Xiaojie Niu; Huashun Li; Tianjie Lou; Qianqian Hu; Youguang Yang; Qi Xu; Zhengdong Wei; Mengsheng Qiu; Kenji F Tanaka; Ying Shen; Yanmei Tao
Journal:  J Neurosci       Date:  2021-11-01       Impact factor: 6.167

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