Literature DB >> 32246903

Differential Scaling of Gene Expression with Cell Size May Explain Size Control in Budding Yeast.

Yuping Chen1, Gang Zhao1, Jakub Zahumensky2, Sangeet Honey1, Bruce Futcher3.   

Abstract

Yeast cells must grow to a critical size before committing to division. It is unknown how size is measured. We find that as cells grow, mRNAs for some cell-cycle activators scale faster than size, increasing in concentration, while mRNAs for some inhibitors scale slower than size, decreasing in concentration. Size-scaled gene expression could cause an increasing ratio of activators to inhibitors with size, triggering cell-cycle entry. Consistent with this, expression of the CLN2 activator from the promoter of the WHI5 inhibitor, or vice versa, interfered with cell size homeostasis, yielding a broader distribution of cell sizes. We suggest that size homeostasis comes from differential scaling of gene expression with size. Differential regulation of gene expression as a function of cell size could affect many cellular processes.
Copyright © 2020 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Cln3; cell cycle; cell cycle control; cell cycle regulation; cell size control; growth Whi5; growth control of division; size homeostasis; start; yeast cell cycle

Mesh:

Substances:

Year:  2020        PMID: 32246903      PMCID: PMC7963363          DOI: 10.1016/j.molcel.2020.03.012

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  80 in total

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Authors:  Stéphanie Cabantous; Thomas C Terwilliger; Geoffrey S Waldo
Journal:  Nat Biotechnol       Date:  2004-12-05       Impact factor: 54.908

2.  Rapid search for specific sites on DNA through conformational switch of nonspecifically bound proteins.

Authors:  Huan-Xiang Zhou
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-04       Impact factor: 11.205

3.  Regulation of progression through the G1 phase of the cell cycle by the rum1+ gene.

Authors:  S Moreno; P Nurse
Journal:  Nature       Date:  1994-01-20       Impact factor: 49.962

4.  Coherence and timing of cell cycle start examined at single-cell resolution.

Authors:  James M Bean; Eric D Siggia; Frederick R Cross
Journal:  Mol Cell       Date:  2006-01-06       Impact factor: 17.970

5.  Control of cell size and cycle time in Schizosaccharomyces pombe.

Authors:  P A Fantes
Journal:  J Cell Sci       Date:  1977-04       Impact factor: 5.285

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Authors:  A Sveiczer; B Novak; J M Mitchison
Journal:  J Cell Sci       Date:  1999-04       Impact factor: 5.285

7.  Experimental testing of a new integrated model of the budding yeast Start transition.

Authors:  Neil R Adames; P Logan Schuck; Katherine C Chen; T M Murali; John J Tyson; Jean Peccoud
Journal:  Mol Biol Cell       Date:  2015-08-26       Impact factor: 4.138

8.  The Cln3-Cdc28 kinase complex of S. cerevisiae is regulated by proteolysis and phosphorylation.

Authors:  M Tyers; G Tokiwa; R Nash; B Futcher
Journal:  EMBO J       Date:  1992-05       Impact factor: 11.598

9.  Origin of irreversibility of cell cycle start in budding yeast.

Authors:  Gilles Charvin; Catherine Oikonomou; Eric D Siggia; Frederick R Cross
Journal:  PLoS Biol       Date:  2010-01-19       Impact factor: 8.029

10.  From START to FINISH: computational analysis of cell cycle control in budding yeast.

Authors:  Pavel Kraikivski; Katherine C Chen; Teeraphan Laomettachit; T M Murali; John J Tyson
Journal:  NPJ Syst Biol Appl       Date:  2015-12-10
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  15 in total

1.  Cell-size regulation in budding yeast does not depend on linear accumulation of Whi5.

Authors:  Felix Barber; Ariel Amir; Andrew W Murray
Journal:  Proc Natl Acad Sci U S A       Date:  2020-06-09       Impact factor: 11.205

2.  Transcriptional and chromatin-based partitioning mechanisms uncouple protein scaling from cell size.

Authors:  Matthew P Swaffer; Jacob Kim; Devon Chandler-Brown; Maurice Langhinrichs; Georgi K Marinov; William J Greenleaf; Anshul Kundaje; Kurt M Schmoller; Jan M Skotheim
Journal:  Mol Cell       Date:  2021-11-02       Impact factor: 17.970

3.  Increasing cell size remodels the proteome and promotes senescence.

Authors:  Michael C Lanz; Evgeny Zatulovskiy; Matthew P Swaffer; Lichao Zhang; Ilayda Ilerten; Shuyuan Zhang; Dong Shin You; Georgi Marinov; Patrick McAlpine; Joshua E Elias; Jan M Skotheim
Journal:  Mol Cell       Date:  2022-08-19       Impact factor: 19.328

4.  Cell region fingerprints enable highly precise single-cell tracking and lineage reconstruction.

Authors:  Andreas P Cuny; Aaron Ponti; Tomas Kündig; Fabian Rudolf; Jörg Stelling
Journal:  Nat Methods       Date:  2022-09-22       Impact factor: 47.990

5.  The G1/S repressor WHI5 is expressed at similar levels throughout the cell cycle.

Authors:  Sylvain Tollis
Journal:  BMC Res Notes       Date:  2022-07-15

6.  Whi5 is diluted and protein synthesis does not dramatically increase in pre-Start G1.

Authors:  Kurt M Schmoller; Michael C Lanz; Jacob Kim; Mardo Koivomagi; Yimiao Qu; Chao Tang; Igor V Kukhtevich; Robert Schneider; Fabian Rudolf; David F Moreno; Martí Aldea; Rafael Lucena; Jan M Skotheim
Journal:  Mol Biol Cell       Date:  2022-05-01       Impact factor: 3.612

7.  Heterogeneous recruitment abilities to RNA polymerases generate nonlinear scaling of gene expression with cell volume.

Authors:  Qirun Wang; Jie Lin
Journal:  Nat Commun       Date:  2021-11-25       Impact factor: 14.919

8.  Cell size is a determinant of stem cell potential during aging.

Authors:  Jette Lengefeld; Chia-Wei Cheng; Pema Maretich; Marguerite Blair; Hannah Hagen; Melanie R McReynolds; Emily Sullivan; Kyra Majors; Christina Roberts; Joon Ho Kang; Joachim D Steiner; Teemu P Miettinen; Scott R Manalis; Adam Antebi; Sean J Morrison; Jacqueline A Lees; Laurie A Boyer; Ömer H Yilmaz; Angelika Amon
Journal:  Sci Adv       Date:  2021-11-12       Impact factor: 14.136

9.  Transcription coordinates histone amounts and genome content.

Authors:  Kora-Lee Claude; Daniela Bureik; Dimitra Chatzitheodoridou; Petia Adarska; Abhyudai Singh; Kurt M Schmoller
Journal:  Nat Commun       Date:  2021-07-09       Impact factor: 14.919

Review 10.  Scaling gene expression for cell size control and senescence in Saccharomyces cerevisiae.

Authors:  Yuping Chen; Bruce Futcher
Journal:  Curr Genet       Date:  2020-11-05       Impact factor: 3.886

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