Literature DB >> 35987199

Increasing cell size remodels the proteome and promotes senescence.

Michael C Lanz1, Evgeny Zatulovskiy2, Matthew P Swaffer3, Lichao Zhang4, Ilayda Ilerten3, Shuyuan Zhang3, Dong Shin You3, Georgi Marinov5, Patrick McAlpine4, Joshua E Elias4, Jan M Skotheim6.   

Abstract

Cell size is tightly controlled in healthy tissues, but it is unclear how deviations in cell size affect cell physiology. To address this, we measured how the cell's proteome changes with increasing cell size. Size-dependent protein concentration changes are widespread and predicted by subcellular localization, size-dependent mRNA concentrations, and protein turnover. As proliferating cells grow larger, concentration changes typically associated with cellular senescence are increasingly pronounced, suggesting that large size may be a cause rather than just a consequence of cell senescence. Consistent with this hypothesis, larger cells are prone to replicative, DNA-damage-induced, and CDK4/6i-induced senescence. Size-dependent changes to the proteome, including those associated with senescence, are not observed when an increase in cell size is accompanied by an increase in ploidy. Together, our findings show how cell size could impact many aspects of cell physiology by remodeling the proteome and provide a rationale for cell size control and polyploidization.
Copyright © 2022 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  DNA damage; SA-beta-Gal; cell cycle; cell size; p16(INK4); palbociclib; polyploidy; proteomics; senescence; size-scaling

Mesh:

Substances:

Year:  2022        PMID: 35987199      PMCID: PMC9444988          DOI: 10.1016/j.molcel.2022.07.017

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   19.328


  59 in total

1.  The distribution of nucleic acids and protein between different sized yeast cells.

Authors:  D H WILLIAMSON; A W SCOPES
Journal:  Exp Cell Res       Date:  1961-06       Impact factor: 3.905

Review 2.  Scaling properties of cell and organelle size.

Authors:  Yee-Hung M Chan; Wallace F Marshall
Journal:  Organogenesis       Date:  2010 Apr-Jun       Impact factor: 2.500

3.  MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification.

Authors:  Jürgen Cox; Matthias Mann
Journal:  Nat Biotechnol       Date:  2008-11-30       Impact factor: 54.908

Review 4.  Endoreplication: polyploidy with purpose.

Authors:  Hyun O Lee; Jean M Davidson; Robert J Duronio
Journal:  Genes Dev       Date:  2009-11-01       Impact factor: 11.361

5.  Cell size homeostasis is maintained by CDK4-dependent activation of p38 MAPK.

Authors:  Ceryl Tan; Miriam B Ginzberg; Rachel Webster; Seshu Iyengar; Shixuan Liu; David Papadopoli; John Concannon; Yuan Wang; Douglas S Auld; Jeremy L Jenkins; Hannes Rost; Ivan Topisirovic; Andreas Hilfinger; W Brent Derry; Nish Patel; Ran Kafri
Journal:  Dev Cell       Date:  2021-05-17       Impact factor: 12.270

6.  Peptide Level Turnover Measurements Enable the Study of Proteoform Dynamics.

Authors:  Jana Zecha; Chen Meng; Daniel Paul Zolg; Patroklos Samaras; Mathias Wilhelm; Bernhard Kuster
Journal:  Mol Cell Proteomics       Date:  2018-02-02       Impact factor: 5.911

7.  A Precise Cdk Activity Threshold Determines Passage through the Restriction Point.

Authors:  Clayton Schwarz; Amy Johnson; Mardo Kõivomägi; Evgeny Zatulovskiy; Carolyn J Kravitz; Andreas Doncic; Jan M Skotheim
Journal:  Mol Cell       Date:  2018-01-18       Impact factor: 17.970

8.  Optimizing optical flow cytometry for cell volume-based sorting and analysis.

Authors:  Amit Tzur; Jodene K Moore; Paul Jorgensen; Howard M Shapiro; Marc W Kirschner
Journal:  PLoS One       Date:  2011-01-20       Impact factor: 3.240

9.  Rapid, simultaneous measurement of DNA, protein, and cell volume in single cells from large mammalian cell populations.

Authors:  H A Crissman; J A Steinkamp
Journal:  J Cell Biol       Date:  1973-12       Impact factor: 10.539

Review 10.  Unravelling nuclear size control.

Authors:  Helena Cantwell; Paul Nurse
Journal:  Curr Genet       Date:  2019-05-31       Impact factor: 3.886

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  3 in total

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Journal:  EMBO J       Date:  2022-08-08       Impact factor: 14.012

2.  The cell cycle inhibitor RB is diluted in G1 and contributes to controlling cell size in the mouse liver.

Authors:  Shuyuan Zhang; Evgeny Zatulovskiy; Julia Arand; Julien Sage; Jan M Skotheim
Journal:  Front Cell Dev Biol       Date:  2022-08-25

3.  Delineation of proteome changes driven by cell size and growth rate.

Authors:  Evgeny Zatulovskiy; Michael C Lanz; Shuyuan Zhang; Frank McCarthy; Joshua E Elias; Jan M Skotheim
Journal:  Front Cell Dev Biol       Date:  2022-09-05
  3 in total

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