Literature DB >> 32246546

One-Step Nucleic Acid Purification and Noise-Resistant Polymerase Chain Reaction by Electrokinetic Concentration for Ultralow-Abundance Nucleic Acid Detection.

Wei Ouyang1, Jongyoon Han1,2.   

Abstract

Nucleic acid amplification tests (NAATs)integrated on a chip hold great promise for point-of-care diagnostics. Currently, nucleic acid (NA) purification remains time-consuming and labor-intensive, and it takes extensive efforts to optimize the amplification chemistry. Using selective electrokinetic concentration, we report one-step, liquid-phase NA purification that is simpler and faster than conventional solid-phase extraction. By further re-concentrating NAs and performing polymerase chain reaction (PCR) in a microfluidic chamber, our platform suppresses non-specific amplification caused by non-optimal PCR designs. We achieved the detection of 5 copies of M. tuberculosis genomic DNA (equaling 0.3 cell) in real biofluids using both optimized and non-optimal PCR designs, which is 10- and 1000-fold fewer than those of the standard bench-top method, respectively. By simplifying the workflow and shortening the development cycle of NAATs, our platform may find use in point-of-care diagnosis.
© 2020 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  disease diagnosis; electrokinetics; microfluidics; nucleic acids; polymerase chain reaction

Mesh:

Substances:

Year:  2020        PMID: 32246546      PMCID: PMC7560970          DOI: 10.1002/anie.201915788

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  54 in total

1.  Nucleic acid purification using microfabricated silicon structures.

Authors:  Nathaniel C Cady; Scott Stelick; Carl A Batt
Journal:  Biosens Bioelectron       Date:  2003-10-30       Impact factor: 10.618

2.  Nucleic acid extraction techniques and application to the microchip.

Authors:  Carol W Price; Daniel C Leslie; James P Landers
Journal:  Lab Chip       Date:  2009-06-22       Impact factor: 6.799

3.  Rapid and selective extraction, isolation, preconcentration, and quantitation of small RNAs from cell lysate using on-chip isotachophoresis.

Authors:  Reto B Schoch; Mostafa Ronaghi; Juan G Santiago
Journal:  Lab Chip       Date:  2009-04-28       Impact factor: 6.799

4.  NAIL: Nucleic Acid detection using Isotachophoresis and Loop-mediated isothermal amplification.

Authors:  Mark D Borysiak; Kevin W Kimura; Jonathan D Posner
Journal:  Lab Chip       Date:  2015-04-07       Impact factor: 6.799

5.  An integrated rotary microfluidic system with DNA extraction, loop-mediated isothermal amplification, and lateral flow strip based detection for point-of-care pathogen diagnostics.

Authors:  Byung Hyun Park; Seung Jun Oh; Jae Hwan Jung; Goro Choi; Ji Hyun Seo; Do Hyun Kim; Eun Yeol Lee; Tae Seok Seo
Journal:  Biosens Bioelectron       Date:  2016-12-14       Impact factor: 10.618

Review 6.  Purification of nucleic acids using isotachophoresis.

Authors:  Anita Rogacs; Lewis A Marshall; Juan G Santiago
Journal:  J Chromatogr A       Date:  2013-12-15       Impact factor: 4.759

Review 7.  Microfluidic isolation of nucleic acids.

Authors:  Sarah J Reinholt; Antje J Baeumner
Journal:  Angew Chem Int Ed Engl       Date:  2014-10-13       Impact factor: 15.336

Review 8.  Advances in microfluidic PCR for point-of-care infectious disease diagnostics.

Authors:  Seungkyung Park; Yi Zhang; Shin Lin; Tza-Huei Wang; Samuel Yang
Journal:  Biotechnol Adv       Date:  2011-06-30       Impact factor: 14.227

9.  Amplification of nonspecific products in quantitative polymerase chain reactions (qPCR).

Authors:  Adrián Ruiz-Villalba; Elizabeth van Pelt-Verkuil; Quinn D Gunst; Jan M Ruijter; Maurice Jb van den Hoff
Journal:  Biomol Detect Quantif       Date:  2017-11-01

10.  Deciphering ion concentration polarization-based electrokinetic molecular concentration at the micro-nanofluidic interface: theoretical limits and scaling laws.

Authors:  Wei Ouyang; Xinghui Ye; Zirui Li; Jongyoon Han
Journal:  Nanoscale       Date:  2018-08-16       Impact factor: 7.790

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Authors:  Francesco Damin; Silvia Galbiati; Stella Gagliardi; Cristina Cereda; Francesca Dragoni; Claudio Fenizia; Valeria Savasi; Laura Sola; Marcella Chiari
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3.  A Salmonella Microfluidic Chip Combining Non-Contact Eddy Heater and 3D Fan-Shaped Mixer with Recombinase Aided Amplification.

Authors:  Shangyi Wu; Hong Duan; Yingchao Zhang; Siyuan Wang; Lingyan Zheng; Gaozhe Cai; Jianhan Lin; Xiqing Yue
Journal:  Biosensors (Basel)       Date:  2022-09-05

Review 4.  Recent Advances in Microfluidic Devices for Contamination Detection and Quality Inspection of Milk.

Authors:  Hwee-Yeong Ng; Wen-Chin Lee; Chia-Te Kung; Lung-Chih Li; Chien-Te Lee; Lung-Ming Fu
Journal:  Micromachines (Basel)       Date:  2021-05-14       Impact factor: 2.891

5.  Point-of-Care PCR Assays for COVID-19 Detection.

Authors:  Niharika Gupta; Shine Augustine; Tarun Narayan; Alan O'Riordan; Asmita Das; D Kumar; John H T Luong; Bansi D Malhotra
Journal:  Biosensors (Basel)       Date:  2021-05-01
  5 in total

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