Literature DB >> 24444800

Purification of nucleic acids using isotachophoresis.

Anita Rogacs1, Lewis A Marshall2, Juan G Santiago3.   

Abstract

Reviewed are methods of nucleic acid (NA) extraction and sample preparation using an electrophoretic purification and focusing method called isotachophoresis (ITP). ITP requires no special surface chemistries or geometric structures, and can be achieved in a compact system with no moving parts. ITP is also compatible with a wide range of samples and lysing methods. Described are general principles of ITP, considerations around the application of ITP to biological samples (e.g., blood, urine and saliva), ITP electrolyte design considerations for fast and selective NA purification, and examples of ITP compatible lysing methods. Several of the challenges associated with purification of NAs are presented as well as methods to address these. Lastly, specific examples of lysing methods and ITP chemistries are described for purification of NA including host and pathogenic DNA, pathogenic rRNA, and host micro-RNA from complex sample matrices.
Copyright © 2013 Elsevier B.V. All rights reserved.

Keywords:  Isotachophoresis; Nucleic acid; Preparative; Sample preparation

Mesh:

Substances:

Year:  2013        PMID: 24444800     DOI: 10.1016/j.chroma.2013.12.027

Source DB:  PubMed          Journal:  J Chromatogr A        ISSN: 0021-9673            Impact factor:   4.759


  13 in total

1.  Simultaneous RNA purification and size selection using on-chip isotachophoresis with an ionic spacer.

Authors:  Crystal M Han; David Catoe; Sarah A Munro; Ruba Khnouf; Michael P Snyder; Juan G Santiago; Marc L Salit; Can Cenik
Journal:  Lab Chip       Date:  2019-07-22       Impact factor: 6.799

2.  Nondestructive nanostraw intracellular sampling for longitudinal cell monitoring.

Authors:  Yuhong Cao; Martin Hjort; Haodong Chen; Fikri Birey; Sergio A Leal-Ortiz; Crystal M Han; Juan G Santiago; Sergiu P Paşca; Joseph C Wu; Nicholas A Melosh
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-21       Impact factor: 11.205

3.  Nucleic acid sample preparation from whole blood in a paper microfluidic device using isotachophoresis.

Authors:  Benjamin P Sullivan; Andrew T Bender; Duy N Ngyuen; Jane Yuqian Zhang; Jonathan D Posner
Journal:  J Chromatogr B Analyt Technol Biomed Life Sci       Date:  2020-12-13       Impact factor: 3.205

4.  Transverse migration and microfluidic concentration of DNA using Newtonian buffers.

Authors:  Ryan J Montes; Anthony J C Ladd; Jason E Butler
Journal:  Biomicrofluidics       Date:  2019-07-23       Impact factor: 2.800

Review 5.  Isotachophoresis: Theory and Microfluidic Applications.

Authors:  Ashwin Ramachandran; Juan G Santiago
Journal:  Chem Rev       Date:  2022-06-22       Impact factor: 72.087

6.  One-Step Nucleic Acid Purification and Noise-Resistant Polymerase Chain Reaction by Electrokinetic Concentration for Ultralow-Abundance Nucleic Acid Detection.

Authors:  Wei Ouyang; Jongyoon Han
Journal:  Angew Chem Int Ed Engl       Date:  2020-04-30       Impact factor: 15.336

7.  CO2-leakage-driven diffusiophoresis causes spontaneous accumulation of charged materials in channel flow.

Authors:  Suin Shim; Howard A Stone
Journal:  Proc Natl Acad Sci U S A       Date:  2020-10-02       Impact factor: 11.205

8.  HIV detection from human serum with paper-based isotachophoretic RNA extraction and reverse transcription recombinase polymerase amplification.

Authors:  Andrew T Bender; Benjamin P Sullivan; Jane Y Zhang; David C Juergens; Lorraine Lillis; David S Boyle; Jonathan D Posner
Journal:  Analyst       Date:  2021-05-04       Impact factor: 5.227

9.  Molecular rheotaxis directs DNA migration and concentration against a pressure-driven flow.

Authors:  Sarah M Friedrich; Jeffrey M Burke; Kelvin J Liu; Cornelius F Ivory; Tza-Huei Wang
Journal:  Nat Commun       Date:  2017-10-31       Impact factor: 14.919

10.  Coupling isotachophoresis with affinity chromatography for rapid and selective purification with high column utilization, part 1: theory.

Authors:  Viktor Shkolnikov; Juan G Santiago
Journal:  Anal Chem       Date:  2014-06-17       Impact factor: 6.986

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