Literature DB >> 32236722

Nonomuraea basaltis sp. nov., a siderophore-producing actinobacteria isolated from surface soil of basaltic parent material.

Salih Saricaoglu1,2, Hayrettin Saygin3, Ahmet Ridvan Topkara2, Talha Gencbay2, Kiymet Guven4, Demet Cetin5, Nevzat Sahin3, Kamil Isik6.   

Abstract

A Gram-stain-positive, aerobic, spore-forming actinobacterial strain, designated 160415T, was isolated from a surface soil sample, which was formed on basaltic parent material, collected from Samsun, Turkey. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain 160415T clustered closely with species of the genus Nonomuraea, and showed the highest sequence similarity to Nonomuraea zeae NEAU-ND5T, Nonomuraea candida HMC10T and Nonomuraea turkmeniaca DSM 43926T with 99.1%, 98.9% and 98.7%, respectively. Chemotaxonomic properties including major menaquinones, diaminopimelic acid, sugar and phospholipid profiles also confirmed the affiliation of the strain to the genus Nonomuraea. The DNA G+C content of strain 160415T was 69.6 mol%. DNA-DNA hybridization and average nucleotide identity values between the strain and closely related type strains were less than the recommended cut-off values. On the basis of phylogenetic relationships, genotypic and phenotypic characterizations, strain 160415T represents a novel species of the genus Nonomuraea, for which the name Nonomuraea basaltis sp. nov. is proposed. The type strain is 160415T (= KCTC 39875T = DSM 104309T).

Entities:  

Keywords:  Actinobacteria; Basaltic parent material; Nonomuraea; Whole-genome

Mesh:

Substances:

Year:  2020        PMID: 32236722     DOI: 10.1007/s00203-020-01866-3

Source DB:  PubMed          Journal:  Arch Microbiol        ISSN: 0302-8933            Impact factor:   2.552


  25 in total

1.  FRESH ISOLATES OF ACTINOMYCETES IN WHICH THE PRESENCE OF SPOROGENOUS AERIAL MYCELIA IS A FLUCTUATING CHARACTERISTIC.

Authors:  K L Jones
Journal:  J Bacteriol       Date:  1949-02       Impact factor: 3.490

2.  DNA-DNA hybridization values and their relationship to whole-genome sequence similarities.

Authors:  Johan Goris; Konstantinos T Konstantinidis; Joel A Klappenbach; Tom Coenye; Peter Vandamme; James M Tiedje
Journal:  Int J Syst Evol Microbiol       Date:  2007-01       Impact factor: 2.747

3.  CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP.

Authors:  Joseph Felsenstein
Journal:  Evolution       Date:  1985-07       Impact factor: 3.694

4.  Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes.

Authors:  Jongsik Chun; Aharon Oren; Antonio Ventosa; Henrik Christensen; David Ruiz Arahal; Milton S da Costa; Alejandro P Rooney; Hana Yi; Xue-Wei Xu; Sofie De Meyer; Martha E Trujillo
Journal:  Int J Syst Evol Microbiol       Date:  2018-01       Impact factor: 2.747

5.  Evolutionary trees from DNA sequences: a maximum likelihood approach.

Authors:  J Felsenstein
Journal:  J Mol Evol       Date:  1981       Impact factor: 2.395

6.  Numerical taxonomy of some nocardioform bacteria.

Authors:  M Goodfellow
Journal:  J Gen Microbiol       Date:  1971-11

7.  Nonomuraea mangrovi sp. nov., an actinomycete isolated from mangrove soil.

Authors:  Huiqin Huang; Min Liu; Weida Zhong; Kunlian Mo; Jun Zhu; Xiaoxiao Zou; Yonghua Hu; Shixiang Bao
Journal:  Int J Syst Evol Microbiol       Date:  2018-09-04       Impact factor: 2.747

8.  Nonomuraea lactucae sp. nov., a novel actinomycete isolated from rhizosphere soil of lettuce (Lactuca sativa).

Authors:  Peng Cao; Ying Wang; Peng Sun; Chenxu Li; Junwei Zhao; Shanwen Jiang; Yan Zhang; Xiangjing Wang; Wensheng Xiang
Journal:  Int J Syst Evol Microbiol       Date:  2018-12-12       Impact factor: 2.747

9.  antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline.

Authors:  Kai Blin; Simon Shaw; Katharina Steinke; Rasmus Villebro; Nadine Ziemert; Sang Yup Lee; Marnix H Medema; Tilmann Weber
Journal:  Nucleic Acids Res       Date:  2019-07-02       Impact factor: 16.971

Review 10.  Siderophores in environmental research: roles and applications.

Authors:  E Ahmed; S J M Holmström
Journal:  Microb Biotechnol       Date:  2014-02-27       Impact factor: 5.813

View more
  2 in total

1.  Nonomuraea cypriaca sp. nov., isolated from soil.

Authors:  Aysel Veyisoglu
Journal:  Arch Microbiol       Date:  2021-03-12       Impact factor: 2.552

2.  Comprehensive genome analysis of a novel actinobacterium with high potential for biotechnological applications, Nonomuraea aridisoli sp. nov., isolated from desert soil.

Authors:  Hayrettin Saygin; Hilal Ay; Kiymet Guven; Demet Cetin; Nevzat Sahin
Journal:  Antonie Van Leeuwenhoek       Date:  2021-09-16       Impact factor: 2.271

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.