| Literature DB >> 32204489 |
Eliana B Souto1,2, Joana R Campos1, Raquel Da Ana1, Carlos Martins-Gomes3,4, Amélia M Silva3,4, Selma B Souto5, Massimo Lucarini6, Alessandra Durazzo6, Antonello Santini7.
Abstract
Genotoxicity screening tests aim to evaluate if and to what extent a compound in contact with the human body (e.g., a drug molecule, a compound from the environment) interacts with DNA. The comet assay is a sensitive method used to predict the risk of DNA damage in individual cells, as it quantifies the tape breaks, being the alkaline version (pH > 13) the most commonly used in the laboratory. Epithelial cells serve as biomatrices in genotoxicity assessments. As ca. 80% of solid cancers are of epithelial origin, the quantification of the DNA damage upon exposure of epithelial cells to a drug or drug formulation becomes relevant. Comet assays run in epithelial cells also have clinical applications in human biomonitoring, which assesses whether and to what extent is the human body exposed to environmental genotoxic compounds and how such exposure changes over time. Ocular mucosa is particularly exposed to environmental assaults. This review summarizes the published data on the genotoxicity assessment in estimating DNA damage in epithelial cells with a special focus on ocular cell lines. General comet assay procedures for ex vivo and in vivo epithelium samples are also described.Entities:
Keywords: DNA damage; comet assay; epithelial cells; ocular cells lines
Year: 2020 PMID: 32204489 PMCID: PMC7142522 DOI: 10.3390/ijerph17062046
Source DB: PubMed Journal: Int J Environ Res Public Health ISSN: 1660-4601 Impact factor: 3.390
Figure 1Anatomical and physiological features of the eye structure.
Ocular cell lines.
| Ocular Cell Line | Characteristics | Refs |
|---|---|---|
| RPE-J | RPE-J is a retinal pigment epithelial (RPE) cell line, obtained from the primary cultures of RPE cells obtained on 7-day-old Long–Evans rats. | [ |
| RF/6A | RF/6A—monkey endothelial cell line—is spontaneously transformed at an early age and had been passaged over 540 times. | [ |
| BCE C/D 1-b | BCE C/D-1b—cow endothelial cell line—is established from explants of normal adult bovine corneas. | [ |
| WERI-Rb-1 | WERI-Rb-1 is a human retinoblastoma tumorigenic cell line used in cell differentiation and biomedical studies, and in animal models of tumor therapy. | [ |
| B-3 | B-3 cell line was removed from a human lens obtained from a 5–12-month-old patient who was treated for premature retinopathy. This cell line was infected with Ad12-SV40 at 60% confluence and passage 3. | [ |
| MP65 | MP65 cell line-primary tumor of uveal melanoma of the eye in adults—is part of a panel that imitates the genetic alterations and mutations of this disease. | [ |
| 2.040 pRSV-T | 2.040 pRSV-T cell line is a primary culture of normal corneal epithelium, it is immortalized by transfection with the plasmid pRSV-T using lipofectamine. pRSV-T incorporates the SV40 early region genes and the Rous Sarcoma virus long terminal repeat. | [ |
| HCE-2 (50.B1) | HCE-2 cell line is a primary culture of normal corneal epithelium, which by incubation was immortalized with the Ad12-SV40 hybrid virus. | [ |
| MP46 | MP46 is a cell line from the primary tumor of uveal melanoma of the eye in adults with the same characteristics of the MP65 cell line. | [ |
| SIRC | Statens Seruminstitut Rabbit Cornea is a cell line from the cornea of rabbits. The early appearance of distinct cytopathic changes makes it suitable for both the propagation and quantification of the rubella virus, making this cell line appropriate for primary isolation of the rubella virus. | [ |
| Fugu Eye | Fugu eye cell line was created from normal eye tissue. These cells maintain a compact genome size with small introns, that are telomerase positive. The cell line can be used for in vitro vertebrate genome research and for marine fish or aquaculture studies. | [ |
| ARPE-19 HPV-16 | ARPE/HPV-16 transformed cell line was derived from the ARPE-19 cell line by transfection with DH5-HPV-16. ARPE-19 is a spontaneously arising retinal pigment epithelium (RPE) cell line that derived from the normal eyes of a 19-year-old male who died from head trauma in a motor vehicle accident. The cells express the RPE-specific markers CRALBP and RPE-65. | [ |
| MP38 | MP38 is a cell line from the primary tumor of uveal melanoma of the eye in adults. It belongs to a unique and first panel of 6 uveal melanoma cell lines from either patient tumors or patient-derived tumor xenografts (PDXs). All these cell lines display GNAQ or GNA11 activating mutations. Four of them present BAP1 (BRCA1 associated protein-1) deficiency, which is known to be a characteristic of aggressive disease. | [ |
| 10.014 pRSV-T | 10.014 pRSV-T cell line—an epithelial cell—was transfected with a plasmid that has the SV40 early region primary culture of normal corneal epithelium, using lipofectamine to immortalize the transfection with plasmid pRSV-T. This plasmid has the SV40 early region genes as well as the Rous Sarcoma virus long terminal repeat. | [ |
| ARPE-19 | ARPE-19 cell line—a transfection host—is a spontaneously arising retinal pigment epithelium (RPE). These cells form stable monolayers, exhibiting morphological and functional polarity. ARPE-19 expresses the RPE-specific markers CRALBP and RPE-65. These cells are diploid and can be carried for over 30 passages. | [ |
| MP41 | MP41 is also a cell line from the primary tumor of uveal melanoma of the eye in adults and has the same characteristics as MP65, MP46 and MP38 cells lines. | [ |
| Y79 | Y79 cell line was isolated after the enucleation of a primary tumor from the right eye, creating a culture. It is known that the donor had a family history of retinoblastoma. After the development of this culture, it was possible to observe analogous ultrastructural characteristics as the original tumor (mainly nuclear membrane infoldings, triple membrane structures, microtubules, large coated vesicles, basal bodies and centrioles, and annulate lamellae). | [ |
| MM28 | MM28 is also part of a panel of cell lines from the primary tumor of uveal melanoma from the adult eye, from either patient tumors or patient-derived tumor xenografts, also showing GNAQ or GNA11 activating mutations and BAP1 deficiency. | [ |
Figure 2Sources of DNA damage and detection methods in comet assays.
Summary of the comet assay protocols in epithelial cells.
| Cell Type | Previous Treatment | Lysis Solution | Electrophoresis Conditions | Neutralization Solution | Staining | Ref. |
|---|---|---|---|---|---|---|
| Corneal | Cells, suspended in 1% Type VII low gelling point agarose, were transferred to a precoated slide with 1% standard agarose | pH = 10 | Alkaline pH (not specified) | pH = 7.5 | Ethidium bromide | [ |
| Cornea | Cells, suspended in 0.65% low melting point agarose, were transferred to a slide coated with 0.65% normal melting point agarose | pH = 10 | pH > 13 | pH = 7.5 | Ethidium bromide | [ |
| Cornea and retina | Cells, suspended in 0.5% low melting point agarose, were transferred to a precoated slide with 1% agarose (type I) | pH = 10 | pH > 13 | pH = 7.5 | Propidium iodide | [ |
| Cornea | Cells, suspended in 0.65% low melting point agarose, were transferred to a slide coated with 0.65% normal melting point agarose | pH = 10 | pH>13 | pH = 7.5 | Ethidium bromide | [ |
| Lens | Cells, suspended in 0.6% low melting point agarose, were transferred to a slide coated with normal melting point agarose | pH = 10 | Alkaline pH (not specified) | pH = 7.5 | Ethidium bromide | [ |
| Lens | Cells, suspended in phosphate buffer saline and 1% low melting point agarose, were transferred to a slide precoated with agarose (not specified) | pH = 10 | pH = 13 | Phosphate buffer saline | SYBR Gold | [ |
| Between lysis and electrophoresis, samples were treated with three enzymes ((i) DNA glycosy-lase (FPG); (ii) endonuclease III (endoIII); (iii) T4 endonuclease V (T4endoV)) | ||||||
| Tear duct | Cells, suspended in 0.5% low melting point agarose, were transferred to a slide precoated with normal melting point agarose | pH = 10 | pH = 13 | pH = 7.5 | Ethidium bromide | [ |
Some methods for isolation and separation of cells from different ocular tissues used for further comet assay studies.
| Cell Type | Procedure | Ref. |
|---|---|---|
| Corneal Epithelium | Trypsin treatment (0.25% trypsin/EDTA): dissected cornea was immersed in trypsin/EDTA, incubated at 37 °C (5% CO2 atmosphere) and released cells from corneal epithelium were collected after 30, 60 or 90 min, depending on the layer needed for each assay. Cell membrane integrity was assessed with the trypan blue exclusion test. | [ |
| Corneal(rabbit) | The eyes were enucleated and immersed in PBS. Cells were obtained after enzymatic treatment with collagenase. The cornea was dissected in half, and the anterior section was treated with collagenase to separate the stroma from epithelial cells. With this process, the intact epithelium can be peeled off from the stroma. The epithelial piece was washed with serum-free culture media, and after mincing, was treated with 0.25% trypsin in calcium-free buffer solution. | [ |
| Cornea and Retina | Dissected tissues were immersed in HBSS buffer (4 °C). A cell suspension was obtained by mincing cornea and retina tissues, in the same buffer, with a tweezer. | [ |
| Lens | Cell suspension of single cells was obtained by mechanical disruption. Lenses were removed by an experienced surgeon after corneal incision and were kept in DMEM⁄F12 with 15% FBS and antibiotics at 4 °C. The lenses were then subjected to several rounds of pipetting and the cells were easily obtained. | [ |
| Tear Duct | Cells were obtained from tears via collection with a capillary, which contains the exfoliated epithelial cells. | [ |
Abbreviations: EDTA—ethylenediaminetetraacetic acid; PBS—phosphate buffer saline; HBSS—Hank’s balanced salt solution; DMEM—Dulbecco’s modified eagle medium; FBS—fetal bovine serum.