| Literature DB >> 32180355 |
Yanchu Zhao1,2,3, Yuan Zhao1,2,4, Shan Zheng2,4,5, Li Zhao1,2,4, Xuegang Li1,2,4, Wuchang Zhang1,2,4, Gérald Grégori6, Tian Xiao1,2,4.
Abstract
The shallow Caroline Seamount is located in the tropical western Pacific Ocean. Its summit is 57 m below the surface and penetrates the euphotic zone. Therefore, it is ideal for the study of the influence of seamount on plankton distribution. Here, virioplankton abundance and distribution were investigated by flow cytometry (FCM) in the Caroline Seamount in August and September 2017. The total abundance of virus-like particles (VLP) was in the range of 0.64 × 106 -18.77 × 106 particles/ml and the average was 5.37 ± 3.75 × 106 particles/ml. Three to four distinct viral subclusters with similar side scatter but different green fluorescence intensities were identified. Above the deep chlorophyll maximum (DCM), two medium fluorescence virus (MFV) subclusters were discriminated. Between the DCM and the deeper layers, only one MFV subcluster was resolved. In general, low fluorescence viruses (LFV) comprised the most abundant subclusters. In the 75-150 m water column, however, the MFV abundance was higher than the LFV abundance. High fluorescence viruses (HFV) constituted the least abundant subcluster throughout the entire water column. Virioplankton abundance was significantly enhanced at the seamount stations. Environmental factors including water temperature and nitrate concentration were the most correlated with the variation in virioplankton abundance at the seamount stations. Interactions between shallow seamounts and local currents can support large virus standing stocks, causing a so-called indirect "seamount effect" on the virioplankton.Entities:
Keywords: Caroline Seamount; flow cytometry; seamount effect; viral subclusters; virioplankton
Mesh:
Year: 2020 PMID: 32180355 PMCID: PMC7294315 DOI: 10.1002/mbo3.1031
Source DB: PubMed Journal: Microbiologyopen ISSN: 2045-8827 Impact factor: 3.139
Figure 1Sampling stations in the Caroline Seamount. Stations inside the red rectangle are seamount stations. Others are far‐field stations. Contours are depths in meters. Figures created with Golden Software Surfer v. 13 https://www.goldensoftware.com/products/surfer
Sampling stations and sample depths for seamount and far‐field stations in upper 75 m water column
| Station | Latitude (°N) | Longitude (°E) | Sampled depths (m) | |
|---|---|---|---|---|
| Seamount stations | 0 | 10.4769 | 140.1347 | 3, 15, 30, 50, 75 |
| 1 | 10.4335 | 140.1483 | 3, 15, 30, 50 | |
| 2 | 10.4081 | 140.1569 | 3, 30, 50, 75 | |
| 3 | 10.3706 | 140.1684 | 3, 30, 50, 75 | |
| 5 | 10.5233 | 140.1194 | 3, 15, 30, 50 | |
| 6 | 10.5601 | 140.1179 | 3, 30, 50, 75 | |
| 11 | 10.4762 | 140.1118 | 3, 30, 50, 75 | |
| 12 | 10.4754 | 140.0921 | 3, 30, 50, 75 | |
| 17 | 10.4807 | 140.1575 | 3, 30, 50, 75 | |
| 18 | 10.4886 | 140.1898 | 3, 30, 50, 75 | |
| Far‐field stations | 4 | 10.3040 | 140.1898 | 3, 30, 50, 75 |
| 7 | 10.6199 | 140.1192 | 3, 30, 50, 75 | |
| 8 | 10.6628 | 140.1218 | 3, 30, 50, 75 | |
| 9 | 10.7213 | 140.1205 | 3, 30, 50, 75 | |
| 10 | 10.9138 | 140.0889 | 3, 30, 50, 75 | |
| 13 | 10.4738 | 140.0629 | 3, 30, 50, 75 | |
| 14 | 10.4717 | 140.0029 | 3, 30, 50, 75 | |
| 15 | 10.4696 | 139.9285 | 3, 30, 50, 75 | |
| 16 | 10.4688 | 139.8599 | 3, 30, 50, 75 | |
| 19 | 10.4973 | 140.2264 | 3, 30, 50, 75 | |
| 20 | 10.5117 | 140.2862 | 3, 30, 50, 75 | |
| 21 | 10.5329 | 140.3765 | 3, 30, 50, 75 |
Sampling stations and sample depths
| Station | Latitude (°N) | Longitude (°E) | Depth (m) | Sampled depths (m) | |
|---|---|---|---|---|---|
| Seamount stations | 0 | 10.4769 | 140.1347 | 110 | 3, 15, 30, 50, 75, 101 |
| 1 | 10.4335 | 140.1483 | 57 | 3, 15, 30, 50 | |
| 2 | 10.4081 | 140.1569 | 1,140 | 3, 30, 50, 75, 118, 150, 200, 300, 500, 1,130 | |
| 3 | 10.3706 | 140.1684 | 1,465 | 3, 30, 50, 75, 128, 150, 200, 300, 500, 1,000, 1,450 | |
| 5 | 10.5233 | 140.1194 | 92 | 3, 15, 30, 50, 87 | |
| 6 | 10.5601 | 140.1179 | 932 | 3, 30, 50, 75, 115, 150, 200, 300, 500, 920 | |
| 11 | 10.4762 | 140.1118 | 615 | 3, 30, 50, 75, 100, 133, 200, 300, 610 | |
| 12 | 10.4754 | 140.0921 | 1,555 | 3, 30, 50, 75, 119, 150, 200, 300, 500, 1,000, 1,540 | |
| 17 | 10.4807 | 140.1575 | 506 | 3, 30, 50, 75, 100, 126, 200, 300, 500 | |
| 18 | 10.4886 | 140.1898 | 1,716 | 3, 30, 50, 75, 120, 150, 200, 300, 500, 1,000, 1,700 | |
| Far‐field stations | 4 | 10.3040 | 140.1898 | 1,521 | 3, 30, 50, 75, 120, 150, 200, 300, 500, 1,000, 1,506 |
| 7 | 10.6199 | 140.1192 | 2,368 | 3, 30, 50, 75, 100, 136, 200, 300, 500, 1,000, 2,340 | |
| 8 | 10.6628 | 140.1218 | 3,508 | 3, 30, 50, 75, 100, 128, 200, 300, 500, 1,000, 2,000, 3,490 | |
| 9 | 10.7213 | 140.1205 | 4,512 | 3, 30, 50, 75, 100, 138, 200, 300, 500, 1,000, 2,000, 4,501 | |
| 10 | 10.9138 | 140.0889 | 5,999 | 3, 30, 50, 75, 100, 138, 200, 300, 500, 1,000, 2,000, 4,000, 5,950 | |
| 13 | 10.4738 | 140.0629 | 2,211 | 3, 30, 50, 75, 112, 150, 200, 300, 500, 1,000, 2,190 | |
| 14 | 10.4717 | 140.0029 | 2,297 | 3, 30, 50, 75, 119, 150, 200, 300, 500, 1,000, 2,271, | |
| 15 | 10.4696 | 139.9285 | 2,778 | 3, 30, 50, 75, 100, 150, 200, 300, 500, 1,000, 2,763 | |
| 16 | 10.4688 | 139.8599 | 2,760 | 3, 30, 50, 75, 100, 136, 200, 300, 500, 1,000, 2,000, 2,730 | |
| 19 | 10.4973 | 140.2264 | 2,500 | 3, 30, 50, 75, 100, 132, 200, 300, 500, 1,000, 2,000, 2,470 | |
| 20 | 10.5117 | 140.2862 | 2,731 | 3, 30, 50, 75, 100, 131, 200, 300, 500, 1,000, 2,000, 2,700 | |
| 21 | 10.5329 | 140.3765 | 2,477 | 3, 30, 50, 75, 100, 131, 200, 300, 500, 1,000, 2,000, 2,448 |
Figure 2Vertical distributions of environmental factors along Transects A and B in 0–3,000 m (1st and 2nd columns) and 0–300 m (3rd and 4th columns) water columns in the Caroline Seamount. T (a‐d): temperature, °C; S (e‐h): salinity; NH4 + (i‐l), NO2 – (m‐p), NO3 – (q‐t), PO4 3– (u‐x): μmol/L. E, east; N, north; S, south; W, west. Figures created in Golden Software Surfer v. 13, https://www.goldensoftware.com/products/surfer
Figure 3Vertical distributions of in situ Chl a fluorescence and picoplankton abundance along Transects A and B in 0–3,000 m (1st and 2nd columns) and 0–300 m (3rd and 4th columns) water columns in the Caroline Seamount. Chl a (a‐d): in situ Chl a fluorescence; SYN (e‐h): Synechococcus , ×103 cells/ml; PRO (i‐l): Prochlorococcus , ×103 cells/ml; PEUK (m‐p): picoeukaryotes, ×103 cells/ml; HP (q‐t): heterotrophic prokaryotes, ×105 cells/ml. E, east; N, north; S, south; W, west. Figures created in Golden Software Surfer v. 13 https://www.goldensoftware.com/products/surfer
Environmental factors and picoplankton and virioplankton abundances in the Caroline Seamount
| Epipelagic (0–200 m) | Mesopelagic (200–1,000 m) | Bathypelagic (1,000–3,000 m) | Water column (0–3,000 m) | |
|---|---|---|---|---|
| Temperature (°C) | 27.01 ± 4.93 | 9.77 ± 4.12 | 3.33 ± 1.33 | 20.07 ± 10.77 |
| Salinity | 34.25 ± 0.48 | 34.54 ± 0.10 | 34.60 ± 0.05 | 34.35 ± 0.41 |
| In situ Chl | 0.13 ± 0.16 | 0.10 ± 0.05 | 0.12 ± 0.04 | 0.12 ± 0.13 |
| NO2 − (µmol/L) | 0.07 ± 0.05 | 0.08 ± 0.05 | 0.10 ± 0.06 | 0.07 ± 0.05 |
| NO3 − (µmol/L) | 0.50 ± 0.94 | 6.70 ± 2.76 | 9.71 ± 0.55 | 3.19 ± 3.97 |
| NH4 + (µmol/L) | 4.22 ± 1.80 | 4.52 ± 1.58 | 4.42 ± 1.48 | 4.33 ± 1.73 |
| PO4 3− (µmol/L) | 0.09 ± 0.14 | 0.95 ± 0.38 | 1.34 ± 0.08 | 0.46 ± 0.54 |
| SYN (×103 cells/ml) | 0.61 ± 0.38 | 0.04 ± 0.04 | 0.04 ± 0.03 | 0.42 ± 0.41 |
| PRO (×103 cells/ml) | 20.35 ± 31.40 | 0.78 ± 1.64 | 0.16 ± 0.08 | 13.62 ± 27.32 |
| PEUK (×103 cells/ml) | 0.82 ± 0.51 | 0.04 ± 0.08 | 0.01 ± 0.01 | 0.55 ± 0.57 |
| HP (×105 cells/ml) | 4.97 ± 1.79 | 0.86 ± 0.36 | 0.29 ± 0.07 | 3.50 ± 2.54 |
| VLP (×106 particles/ml) | 7.23 ± 3.21 | 2.06 ± 0.98 | 1.30 ± 0.49 | 5.37 ± 3.75 |
| LFV (×106 particles/ml) | 3.12 ± 1.56 | 1.24 ± 0.63 | 1.02 ± 0.48 | 2.45 ± 1.62 |
| MFV (×106 particles/ml) | 3.29 ± 1.64 | 0.73 ± 0.42 | 0.26 ± 0.06 | 2.36 ± 1.90 |
| HFV (×106 particles/ml) | 0.81 ± 0.50 | 0.10 ± 0.08 | 0.03 ± 0.01 | 0.56 ± 0.54 |
| VPR | 15.88 ± 6.61 | 25.99 ± 10.92 | 45.49 ± 15.32 | 21.71 ± 13.64 |
Abbreviations: HFV, high fluorescence viruses; HP, heterotrophic prokaryotes; LFV, low fluorescence viruses; MFV, medium fluorescence viruses; PEUK, picoeukaryotes; PRO, Prochlorococcus; SYN, Synechococcus; VLP, virus‐like particles; VPR, virioplankton/prokaryote ratio.
Figure A1Viral subcluster cytograms (a–d), vertical abundance profile for various subclusters (e), and their contributions to total viral abundance (f). (a, b) Sample cytograms of four viral subclusters in upper 75 m layers; (c, d) sample cytograms of three viral subclusters in 100 m and deeper layers. HFV, high fluorescence viruses; LFV, low fluorescence viruses; MFV, medium fluorescence viruses, MFV classified as subclusters MFV‐a and MFV‐b in upper 75 m layers. Indicated abundances are averages for all stations. Figures a‐d created in Beckman Coulter CytExpert, v. 2.3.0.84 https://www.beckman.com/flow‐cytometry/instruments/cytoflex/software. Figures e and f created in OriginLab Origin v. 8.5 https://www.originlab.com/
Figure 4Vertical virioplankton abundance distributions along Transects A and B in 0–3,000 m (1st and 2nd columns) and 0–300 m (3rd and 4th columns) water columns in the Caroline Seamount. VLP (a‐d): virus‐like particles, ×106 particles/ml; LFV (e‐h): low‐fluorescence viruses, ×106 particles/ml; MFV (i‐l): medium‐fluorescence viruses, ×106 particles/ml; HFV (m‐p): high‐fluorescence viruses, ×106 particles/ml. E, east; N, north; S, south; W, west. Figures created in Golden Software Surfer v. 13 https://www.goldensoftware.com/products/surfer
Figure A2Vertical virioplankton and picoplankton distributions in seamount and far‐field stations. F.S., far‐field stations; S.S., seamount stations. Colored dots show virioplankton and picoplankton abundances. Black lines show average virioplankton and picoplankton abundances in seamount and far‐field stations. Red and blue dotted lines show maximum abundance depths in seamount and far‐field stations, respectively. HFV, high fluorescence viruses, ×106 particles/ml; HP, heterotrophic prokaryotes, ×105 cells/ml; LFV, low fluorescence viruses, ×106 particles/ml; MFV, medium fluorescence viruses, ×106 particles/ml; PEUK, picoeukaryotes, ×103 cells/ml; PRO, Prochlorococcus, ×103 cells/ml; SYN, Synechococcus, ×103 cells/ml; VLP, virus‐like particles, ×106 particles/ml. Figures created in Golden Software Grapher v. 8.5 https://www.goldensoftware.com/products/grapher
Figure 5Horizontal distributions of depth‐averaged integrated virioplankton and picoplankton abundances in the epipelagic layers. Black dotted lines indicate the location of Caroline Seamount summit. Seamount stations are inside the red rectangle. Others are far‐field stations. VLP (a): virus‐like particles, ×106 particles/ml; LFV (b): low‐fluorescence viruses, ×106 particles/ml; MFV (c): medium‐fluorescence viruses, ×106 particles/ml; HFV (d): highfluorescence viruses, ×106 particles/ml. SYN (e): Synechococcus , ×103 cells/ml; PRO ( f ) : Prochlorococcus , ×103 cells/ml; PEUK (g): picoeukaryotes, ×103 cells/ml; HP (h): heterotrophic prokaryotes, ×105 cells/ml. Figures created in Golden Software Surfer v. 13 https://www.goldensoftware.com/products/surfer
Figure A3Horizontal virioplankton abundance distributions in the upper 75 m water column. Dotted black lines indicate the location of Caroline Seamount summit. Seamount stations are inside the red rectangle. Others are far‐field stations. HFV, high fluorescence viruses, ×106 particles/ml; LFV, low fluorescence viruses, ×106 particles/ml; MFV, medium fluorescence viruses, ×106 particles/ml, MFV classified as subclusters MFV‐a and MFV‐b in upper 75 m layers; VLP, virus‐like particles, ×106 particles/ml. Figures created in Golden Software Surfer v. 13 https://www.goldensoftware.com/products/surfer
Virioplankton and picoplankton abundances in seamount and far‐field stations in the upper 75 m water column
| Seamount stations ( | Far‐field stations ( |
| |
|---|---|---|---|
| VLP (×106 particles/ml) | 8.31 ± 2.87 | 6.50 ± 2.68 |
|
| LFV (×106 particles/ml) | 3.82 ± 1.41 | 2.87 ± 1.29 |
|
| MFV (×106 particles/ml) | 3.57 ± 1.64 | 2.90 ± 1.42 | NS |
| HFV (×106 particles/ml) | 0.92 ± 0.48 | 0.72 ± 0.42 |
|
| SYN (×103 cells/ml) | 0.83 ± 0.18 | 0.85 ± 0.23 | NS |
| PRO (×103 cells/ml) | 7.36 ± 13.72 | 6.34 ± 14.68 | NS |
| PEUK (×103 cells/ml) | 0.73 ± 0.13 | 0.73 ± 0.09 | NS |
| HP (×105 cells/ml) | 5.88 ± 0.48 | 5.89 ± 0.58 | NS |
| VPR | 14.17 ± 4.88 | 11.08 ± 4.61 |
|
t test; NS, not significant.
Abbreviations: HFV, high fluorescence viruses; HP, heterotrophic prokaryotes; LFV, low fluorescence viruses; MFV, medium fluorescence viruses; PEUK, picoeukaryotes; PRO, Prochlorococcus; SYN, Synechococcus; VLP, virus‐like particles; VPR, virioplankton/prokaryote ratio.
p < .05.
p < .01.
Figure 6Redundancy analysis (RDA) of virioplankton and picoplankton abundances and environmental factors in the epipelagic layers (a) and entire water column (b). Blue arrows: virioplankton; black arrows: picoplankton; red arrows: environmental factors. Orange dots: seamount stations; pink dots: far‐field stations. Chl a, in situ Chl a fluorescence; HFV, high fluorescence viruses; HP, heterotrophic prokaryotes; LFV, low fluorescence viruses; MFV, medium fluorescence viruses; PEUK, picoeukaryotes; POC, particulate organic carbon; PRO, Prochlorococcus; S, salinity; SYN, Synechococcus; T, temperature; VLP, virus‐like particles. Figures created in Microcomputer Power CANOCO for Windows v. 4.5 http://www.microcomputerpower.com/
Multivariate regression analyses with forward selection (DISTLM forward) explaining variabilities in virioplankton and picoplankton abundances and environmental factors in the epipelagic layers of Caroline Seamount
| Selected variables | Pseudo‐F |
|
| Cumulative | |
|---|---|---|---|---|---|
| Seamount stations ( | |||||
| VLP | NO3 − | 54.69 | 0.001 | 0.47 | 0.47 |
| S | 19.01 | 0.001 | 0.10 | 0.57 | |
| PRO | 6.85 | 0.011 | 0.05 | 0.62 | |
| HP | 6.45 | 0.011 | 0.05 | 0.67 | |
| LFV | T | 56.87 | 0.001 | 0.48 | 0.48 |
| NO3 − | 9.04 | 0.009 | 0.07 | 0.55 | |
| MFV | NO3 − | 37.50 | 0.001 | 0.38 | 0.38 |
| HP | 56.35 | 0.001 | 0.23 | 0.61 | |
| S | 17.20 | 0.001 | 0.14 | 0.75 | |
| PRO | 10.79 | 0.006 | 0.04 | 0.79 | |
| HFV | NO3 − | 40.40 | 0.001 | 0.40 | 0.40 |
| S | 77.28 | 0.001 | 0.24 | 0.64 | |
| PRO | 12.52 | 0.001 | 0.10 | 0.74 | |
| HP | 10.16 | 0.003 | 0.07 | 0.81 | |
| Far‐field stations ( | |||||
| VLP | T | 64.73 | 0.001 | 0.32 | 0.32 |
| S | 30.92 | 0.001 | 0.28 | 0.60 | |
| LFV | HP | 20.31 | 0.001 | 0.20 | 0.20 |
| S | 22.24 | 0.001 | 0.17 | 0.37 | |
| NO2 − | 8.22 | 0.005 | 0.06 | 0.43 | |
| MFV | PRO | 42.03 | 0.001 | 0.34 | 0.34 |
| NO3 − | 30.91 | 0.001 | 0.18 | 0.52 | |
| T | 54.34 | 0.001 | 0.14 | 0.66 | |
| Depth | 28.96 | 0.001 | 0.13 | 0.79 | |
| HFV | NO3 − | 50.99 | 0.001 | 0.39 | 0.39 |
| Depth | 41.28 | 0.001 | 0.21 | 0.60 | |
| T | 57.20 | 0.001 | 0.17 | 0.77 | |
| HP | 13.51 | 0.001 | 0.03 | 0.80 | |
The response variable was log‐transformed and resulting data converted into Euclidian distance similarity matrices. Pseudo‐F and P values obtained by permutation (n = 999).
Abbreviations: HFV, high fluorescence viruses; HP, heterotrophic prokaryotes; LFV, low fluorescence viruses; MFV, medium fluorescence viruses; PRO, Prochlorococcus; S, salinity; T, temperature; VLP, virus‐like particles.
Comparison of virioplankton abundance and subclusters and VPR from relevant studies
| Study areas | Abundance (×106 particles/ml) | Subclusters | VPR | References |
|---|---|---|---|---|
| Tropical Western Pacific Ocean | 1.30 ± 0.49–7.23 ± 3.21 | 3–4 | 15.88 ± 6.61–45.49 ± 15.32 | Present study |
| Western Pacific Ocean | 0.8 ± 0.3–6.9 ± 3.2 | 2 | 14.6 ± 5.6–21.2 ± 9.0 | Liang et al. ( |
| Western Pacific Ocean | 0.68 ± 0.36–5.82 ± 2.05 | 10.08 ± 2.41–14.68 ± 6.71 | Li et al. ( | |
| Central Pacific Ocean and the Pacific sector of the Southern Ocean | 1.5–32 | 3 | 8.6 ± 2.4–22.2 ± 14.4 | Yang et al. ( |
| Global cruise (South China Sea, Indian Ocean, Atlantic Ocean, Pacific Ocean) | 1.11 ± 0.78–8.94 ± 4.69 | 2 | 16.2 ± 7.9–19.0 ± 8.2 | Liang et al. ( |
| North Atlantic Ocean | 5 | Mojica et al. ( | ||
| North Atlantic latitudinal transect | 0.58 ± 0.23–4.48 ± 2.38 | 3 | 19.2 ± 8.3–59.1 ± 18.7 | De Corte et al. ( |
| (Sub)tropical Atlantic Ocean | 0.43 ± 0.08–2.54 ± 1.09 | 3 | 9.51 ± 2.63–25.18 ± 4.48 | De Corte et al. ( |
| South Atlantic Ocean | 0.61 ± 0.31–4.66 ± 4.06 | 3 | 15.0 ± 15.7–32.9 ± 25.1 | De Corte et al. ( |
| Eastern Mediterranean Sea | 0.12–27 | 3 | 3.9–44.2 | Magiopoulos and Pitta ( |
| Northwestern Mediterranean Sea | 0.9 ± 0.3–17.4 ± 19.6 | 3 | 13.9 ± 4.0–22.2 ± 15.3 | Winter et al. ( |
| North Sea | 5–70 | 4 | Baudoux et al. ( | |
| East China Sea | 0.34–2.3 | 2 | Yang and Jiao ( | |
| Norwegian coastal waters | 3 | 4.3 ± 2.4 | Bratbak et al. ( |
Abbreviation: VPR, virioplankton/prokaryote ratio.