Literature DB >> 32168387

Structure and function of LCI1: a plasma membrane CO2 channel in the Chlamydomonas CO2 concentrating mechanism.

Alfredo Kono1, Tsung-Han Chou2, Abhijith Radhakrishnan3, Jani Reddy Bolla4, Kannan Sankar5, Sayane Shome6, Chih-Chia Su2, Robert L Jernigan5,6, Carol V Robinson4, Edward W Yu2,3, Martin H Spalding1.   

Abstract

Microalgae and cyanobacteria contribute roughly half of the global photosynthetic carbon assimilation. Faced with limited access to CO2 in aquatic environments, which can vary daily or hourly, these microorganisms have evolved use of an efficient CO2 concentrating mechanism (CCM) to accumulate high internal concentrations of inorganic carbon (Ci ) to maintain photosynthetic performance. For eukaryotic algae, a combination of molecular, genetic and physiological studies using the model organism Chlamydomonas reinhardtii, have revealed the function and molecular characteristics of many CCM components, including active Ci uptake systems. Fundamental to eukaryotic Ci uptake systems are Ci transporters/channels located in membranes of various cell compartments, which together facilitate the movement of Ci from the environment into the chloroplast, where primary CO2 assimilation occurs. Two putative plasma membrane Ci transporters, HLA3 and LCI1, are reportedly involved in active Ci uptake. Based on previous studies, HLA3 clearly plays a meaningful role in HCO3 - transport, but the function of LCI1 has not yet been thoroughly investigated so remains somewhat obscure. Here we report a crystal structure of the full-length LCI1 membrane protein to reveal LCI1 structural characteristics, as well as in vivo physiological studies in an LCI1 loss-of-function mutant to reveal the Ci species preference for LCI1. Together, these new studies demonstrate LCI1 plays an important role in active CO2 uptake and that LCI1 likely functions as a plasma membrane CO2 channel, possibly a gated channel.
© 2020 Society for Experimental Biology and John Wiley & Sons Ltd.

Entities:  

Keywords:  zzm321990Chlamydomonaszzm321990; CCM; CO2; Ci; LCI1; channel; photosynthesis; transporter

Mesh:

Substances:

Year:  2020        PMID: 32168387      PMCID: PMC7305984          DOI: 10.1111/tpj.14745

Source DB:  PubMed          Journal:  Plant J        ISSN: 0960-7412            Impact factor:   6.417


  45 in total

1.  Substructure solution with SHELXD.

Authors:  Thomas R Schneider; George M Sheldrick
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-09-28

2.  Expression of a low CO₂-inducible protein, LCI1, increases inorganic carbon uptake in the green alga Chlamydomonas reinhardtii.

Authors:  Norikazu Ohnishi; Bratati Mukherjee; Tomoki Tsujikawa; Mari Yanase; Hirobumi Nakano; James V Moroney; Hideya Fukuzawa
Journal:  Plant Cell       Date:  2010-09-24       Impact factor: 11.277

3.  Coot: model-building tools for molecular graphics.

Authors:  Paul Emsley; Kevin Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-11-26

4.  Studies of Chloroplast Development in Euglena. V. Pigment Biosynthesis, Photosynthetic Oxygen Evolution and Carbon Dioxide Fixation during Chloroplast Development.

Authors:  A I Stern; J A Schiff; H T Epstein
Journal:  Plant Physiol       Date:  1964-03       Impact factor: 8.340

5.  AutoDock Vina: improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading.

Authors:  Oleg Trott; Arthur J Olson
Journal:  J Comput Chem       Date:  2010-01-30       Impact factor: 3.376

6.  Crystallography & NMR system: A new software suite for macromolecular structure determination.

Authors:  A T Brünger; P D Adams; G M Clore; W L DeLano; P Gros; R W Grosse-Kunstleve; J S Jiang; J Kuszewski; M Nilges; N S Pannu; R J Read; L M Rice; T Simonson; G L Warren
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-09-01

7.  VMD: visual molecular dynamics.

Authors:  W Humphrey; A Dalke; K Schulten
Journal:  J Mol Graph       Date:  1996-02

8.  An inorganic carbon transport system responsible for acclimation specific to air levels of CO2 in Chlamydomonas reinhardtii.

Authors:  Yingjun Wang; Martin H Spalding
Journal:  Proc Natl Acad Sci U S A       Date:  2006-06-15       Impact factor: 11.205

Review 9.  CO2 concentrating mechanisms in algae: mechanisms, environmental modulation, and evolution.

Authors:  Mario Giordano; John Beardall; John A Raven
Journal:  Annu Rev Plant Biol       Date:  2005       Impact factor: 26.379

10.  Maximum-likelihood density modification using pattern recognition of structural motifs.

Authors:  T C Terwilliger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2001-11-21
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  5 in total

1.  Characterization of a CO2-Concentrating Mechanism with Low Sodium Dependency in the Centric Diatom Chaetoceros gracilis.

Authors:  Yoshinori Tsuji; George Kusi-Appiah; Noriko Kozai; Yuri Fukuda; Takashi Yamano; Hideya Fukuzawa
Journal:  Mar Biotechnol (NY)       Date:  2021-06-09       Impact factor: 3.619

2.  Mitochondrial carbonic anhydrases are needed for optimal photosynthesis at low CO2 levels in Chlamydomonas.

Authors:  Ashwani K Rai; Timothy Chen; James V Moroney
Journal:  Plant Physiol       Date:  2021-11-03       Impact factor: 8.005

Review 3.  Recent Progress on Systems and Synthetic Biology of Diatoms for Improving Algal Productivity.

Authors:  Jiwei Chen; Yifan Huang; Yuexuan Shu; Xiaoyue Hu; Di Wu; Hangjin Jiang; Kui Wang; Weihua Liu; Weiqi Fu
Journal:  Front Bioeng Biotechnol       Date:  2022-05-13

4.  Cyclophilin anaCyp40 regulates photosystem assembly and phycobilisome association in a cyanobacterium.

Authors:  Shivam Yadav; Martin Centola; Mathilda Glaesmann; Denys Pogoryelov; Roman Ladig; Mike Heilemann; L C Rai; Özkan Yildiz; Enrico Schleiff
Journal:  Nat Commun       Date:  2022-03-30       Impact factor: 17.694

5.  Phylogenetic analysis and structural prediction reveal the potential functional diversity between green algae SWEET transporters.

Authors:  Jack Fleet; Mujtaba Ansari; Jon K Pittman
Journal:  Front Plant Sci       Date:  2022-09-15       Impact factor: 6.627

  5 in total

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