Literature DB >> 32149600

Inference of nonlinear receptive field subunits with spike-triggered clustering.

Nishal P Shah1, Nora Brackbill2, Colleen Rhoades3, Alexandra Kling4,5,6, Georges Goetz4,5,6, Alan M Litke7, Alexander Sher8, Eero P Simoncelli9,10, E J Chichilnisky4,5,6.   

Abstract

Responses of sensory neurons are often modeled using a weighted combination of rectified linear subunits. Since these subunits often cannot be measured directly, a flexible method is needed to infer their properties from the responses of downstream neurons. We present a method for maximum likelihood estimation of subunits by soft-clustering spike-triggered stimuli, and demonstrate its effectiveness in visual neurons. For parasol retinal ganglion cells in macaque retina, estimated subunits partitioned the receptive field into compact regions, likely representing aggregated bipolar cell inputs. Joint clustering revealed shared subunits between neighboring cells, producing a parsimonious population model. Closed-loop validation, using stimuli lying in the null space of the linear receptive field, revealed stronger nonlinearities in OFF cells than ON cells. Responses to natural images, jittered to emulate fixational eye movements, were accurately predicted by the subunit model. Finally, the generality of the approach was demonstrated in macaque V1 neurons.
© 2020, Shah et al.

Entities:  

Keywords:  LNLN model; natural scenes; neuroscience; rhesus macaque; spike triggered analysis; subunits

Mesh:

Year:  2020        PMID: 32149600      PMCID: PMC7062463          DOI: 10.7554/eLife.45743

Source DB:  PubMed          Journal:  Elife        ISSN: 2050-084X            Impact factor:   8.140


  56 in total

1.  Bipolar cells contribute to nonlinear spatial summation in the brisk-transient (Y) ganglion cell in mammalian retina.

Authors:  J B Demb; K Zaghloul; L Haarsma; P Sterling
Journal:  J Neurosci       Date:  2001-10-01       Impact factor: 6.167

2.  Closed-loop measurements of iso-response stimuli reveal dynamic nonlinear stimulus integration in the retina.

Authors:  Daniel Bölinger; Tim Gollisch
Journal:  Neuron       Date:  2012-01-26       Impact factor: 17.173

3.  Visual transduction in cones of the monkey Macaca fascicularis.

Authors:  J L Schnapf; B J Nunn; M Meister; D A Baylor
Journal:  J Physiol       Date:  1990-08       Impact factor: 5.182

4.  Spike-triggered neural characterization.

Authors:  Odelia Schwartz; Jonathan W Pillow; Nicole C Rust; Eero P Simoncelli
Journal:  J Vis       Date:  2006-07-17       Impact factor: 2.240

5.  Retinal adaptation to object motion.

Authors:  Bence P Olveczky; Stephen A Baccus; Markus Meister
Journal:  Neuron       Date:  2007-11-21       Impact factor: 17.173

6.  A retinal circuit that computes object motion.

Authors:  Stephen A Baccus; Bence P Olveczky; Mihai Manu; Markus Meister
Journal:  J Neurosci       Date:  2008-07-02       Impact factor: 6.167

7.  Linear and nonlinear spatial subunits in Y cat retinal ganglion cells.

Authors:  S Hochstein; R M Shapley
Journal:  J Physiol       Date:  1976-11       Impact factor: 5.182

8.  Deep Learning Models of the Retinal Response to Natural Scenes.

Authors:  Lane T McIntosh; Niru Maheswaranathan; Aran Nayebi; Surya Ganguli; Stephen A Baccus
Journal:  Adv Neural Inf Process Syst       Date:  2016

9.  Perspectives on: information and coding in mammalian sensory physiology: nonlinear spatial encoding by retinal ganglion cells: when 1 + 1 ≠ 2.

Authors:  Greg Schwartz; Fred Rieke
Journal:  J Gen Physiol       Date:  2011-09       Impact factor: 4.086

10.  Inferring hidden structure in multilayered neural circuits.

Authors:  Niru Maheswaranathan; David B Kastner; Stephen A Baccus; Surya Ganguli
Journal:  PLoS Comput Biol       Date:  2018-08-23       Impact factor: 4.475

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  6 in total

1.  Individual variability of neural computations in the primate retina.

Authors:  Nishal P Shah; Nora Brackbill; Ryan Samarakoon; Colleen Rhoades; Alexandra Kling; Alexander Sher; Alan Litke; Yoram Singer; Jonathon Shlens; E J Chichilnisky
Journal:  Neuron       Date:  2021-12-20       Impact factor: 18.688

2.  Inference of nonlinear receptive field subunits with spike-triggered clustering.

Authors:  Nishal P Shah; Nora Brackbill; Colleen Rhoades; Alexandra Kling; Georges Goetz; Alan M Litke; Alexander Sher; Eero P Simoncelli; E J Chichilnisky
Journal:  Elife       Date:  2020-03-09       Impact factor: 8.140

3.  Linear and nonlinear chromatic integration in the mouse retina.

Authors:  Mohammad Hossein Khani; Tim Gollisch
Journal:  Nat Commun       Date:  2021-03-26       Impact factor: 14.919

4.  Nonlinear Spatial Integration Underlies the Diversity of Retinal Ganglion Cell Responses to Natural Images.

Authors:  Dimokratis Karamanlis; Tim Gollisch
Journal:  J Neurosci       Date:  2021-03-04       Impact factor: 6.167

5.  Asymmetries around the visual field: From retina to cortex to behavior.

Authors:  Eline R Kupers; Noah C Benson; Marisa Carrasco; Jonathan Winawer
Journal:  PLoS Comput Biol       Date:  2022-01-10       Impact factor: 4.475

6.  Simple model for encoding natural images by retinal ganglion cells with nonlinear spatial integration.

Authors:  Jian K Liu; Dimokratis Karamanlis; Tim Gollisch
Journal:  PLoS Comput Biol       Date:  2022-03-08       Impact factor: 4.475

  6 in total

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