Literature DB >> 32144669

In Vivo Histone Labeling Using Ultrafast trans-Splicing Inteins.

Nicholas A Prescott1,2, Yael David3,4,5,6.   

Abstract

The development of expressed protein ligation (EPL) widened the scope of questions that could be addressed by mechanistic biochemistry. Protein trans-splicing (PTS) relies on the same basic chemical principles, but utilizes split inteins to tracelessly ligate distinct peptide or polypeptide fragments together with native peptide bonds. Here we present a method to adapt PTS methodologies for their use in live cells, in order to deliver synthetic or native histone modifications. As an example, we provide a protocol to incorporate a small molecule fluorophore into chromatinized histones. The protocol should be easily adaptable to incorporate other modifications to chromatin in vivo.

Entities:  

Keywords:  Chromatin; In cellulo labeling; Split inteins; Synthetic biology

Year:  2020        PMID: 32144669      PMCID: PMC7534146          DOI: 10.1007/978-1-0716-0434-2_10

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  21 in total

1.  InBase: the Intein Database.

Authors:  Francine B Perler
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

2.  HaloTag: a novel protein labeling technology for cell imaging and protein analysis.

Authors:  Georgyi V Los; Lance P Encell; Mark G McDougall; Danette D Hartzell; Natasha Karassina; Chad Zimprich; Monika G Wood; Randy Learish; Rachel Friedman Ohana; Marjeta Urh; Dan Simpson; Jacqui Mendez; Kris Zimmerman; Paul Otto; Gediminas Vidugiris; Ji Zhu; Aldis Darzins; Dieter H Klaubert; Robert F Bulleit; Keith V Wood
Journal:  ACS Chem Biol       Date:  2008-06-20       Impact factor: 5.100

3.  Protein semi-synthesis in living cells.

Authors:  Izabela Giriat; Tom W Muir
Journal:  J Am Chem Soc       Date:  2003-06-18       Impact factor: 15.419

Review 4.  Split inteins as versatile tools for protein semisynthesis.

Authors:  Henning D Mootz
Journal:  Chembiochem       Date:  2009-11-02       Impact factor: 3.164

5.  Ultrafast protein splicing is common among cyanobacterial split inteins: implications for protein engineering.

Authors:  Neel H Shah; Geoffrey P Dann; Miquel Vila-Perelló; Zhihua Liu; Tom W Muir
Journal:  J Am Chem Soc       Date:  2012-07-02       Impact factor: 15.419

6.  Biological applications of protein splicing.

Authors:  Miquel Vila-Perelló; Tom W Muir
Journal:  Cell       Date:  2010-10-15       Impact factor: 41.582

7.  ChemMatrix, a poly(ethylene glycol)-based support for the solid-phase synthesis of complex peptides.

Authors:  Fayna García-Martín; Martina Quintanar-Audelo; Yésica García-Ramos; Luis J Cruz; Catherine Gravel; Robert Furic; Simon Côté; Judit Tulla-Puche; Fernando Albericio
Journal:  J Comb Chem       Date:  2006 Mar-Apr

8.  Targeted delivery of an antigenic peptide to the endoplasmic reticulum: application for development of a peptide therapy for ankylosing spondylitis.

Authors:  Hui-Chun Yu; Ming-Chi Lu; Chin Li; Hsien-Lu Huang; Kuang-Yung Huang; Su-Qin Liu; Ning-Sheng Lai; Hsien-Bin Huang
Journal:  PLoS One       Date:  2013-10-14       Impact factor: 3.240

9.  Design of a Split Intein with Exceptional Protein Splicing Activity.

Authors:  Adam J Stevens; Zachary Z Brown; Neel H Shah; Giridhar Sekar; David Cowburn; Tom W Muir
Journal:  J Am Chem Soc       Date:  2016-02-08       Impact factor: 15.419

10.  Chemical tagging and customizing of cellular chromatin states using ultrafast trans-splicing inteins.

Authors:  Yael David; Miquel Vila-Perelló; Shivam Verma; Tom W Muir
Journal:  Nat Chem       Date:  2015-04-06       Impact factor: 24.427

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