Literature DB >> 32134523

The function of histone lysine methylation related SET domain group proteins in plants.

Huiyan Zhou1, Yanhong Liu1, Yuwei Liang1, Dong Zhou1, Shuifeng Li2, Sue Lin3, Heng Dong1,4, Li Huang1.   

Abstract

Histone methylation, which is mediated by the histone lysine (K) methyltransferases (HKMTases), is a mechanism associated with many pathways in eukaryotes. Most HKMTases have a conserved SET (Su(var) 3-9,E(z),Trithorax) domain, while the HKMTases with SET domains are called the SET domain group (SDG) proteins. In plants, only SDG proteins can work as HKMTases. In this review, we introduced the classification of SDG family proteins in plants and the structural characteristics of each subfamily, surmise the functions of SDG family members in plant growth and development processes, including pollen and female gametophyte development, flowering, plant morphology and the responses to stresses. This review will help researchers better understand the SDG proteins and histone methylation in plants and lay a basic foundation for further studies on SDG proteins.
© 2020 The Protein Society.

Entities:  

Keywords:  HKMTases; SDG protein; SET domain group; histone lysine (K) methyltransferase; histone methylation

Mesh：

Substances：

Year:  2020        PMID： 32134523      PMCID： PMC7184775          DOI： 10.1002/pro.3849

Source DB:  PubMed          Journal:  Protein Sci        ISSN： 0961-8368            Impact factor:   6.725


  109 in total

1.  A cotton (Gossypium hirsutum) WRKY transcription factor (GhWRKY22) participates in regulating anther/pollen development.

Authors:  Yao Wang; Yang Li; Shao-Ping He; Ya Gao; Na-Na Wang; Rui Lu; Xue-Bao Li
Journal:  Plant Physiol Biochem       Date:  2019-06-06       Impact factor: 4.270

2.  SET DOMAIN GROUP701 encodes a H3K4-methytransferase and regulates multiple key processes of rice plant development.

Authors:  Kunpeng Liu; Yu Yu; Aiwu Dong; Wen-Hui Shen
Journal:  New Phytol       Date:  2017-05-18       Impact factor: 10.151

Review 3.  Dynamics and function of DNA methylation in plants.

Authors:  Huiming Zhang; Zhaobo Lang; Jian-Kang Zhu
Journal:  Nat Rev Mol Cell Biol       Date:  2018-08       Impact factor: 94.444

4.  In vitro and in vivo analyses of a Phe/Tyr switch controlling product specificity of histone lysine methyltransferases.

Authors:  Robert E Collins; Makoto Tachibana; Hisashi Tamaru; Kristina M Smith; Da Jia; Xing Zhang; Eric U Selker; Yoichi Shinkai; Xiaodong Cheng
Journal:  J Biol Chem       Date:  2004-12-06       Impact factor: 5.157

5.  The Polycomb group protein MEDEA and the DNA methyltransferase MET1 interact to repress autonomous endosperm development in Arabidopsis.

Authors:  Anja Schmidt; Heike J P Wöhrmann; Michael T Raissig; Julia Arand; Jacqueline Gheyselinck; Valeria Gagliardini; Christian Heichinger; Joern Walter; Ueli Grossniklaus
Journal:  Plant J       Date:  2013-02-12       Impact factor: 6.417

6.  Ehd1, a B-type response regulator in rice, confers short-day promotion of flowering and controls FT-like gene expression independently of Hd1.

Authors:  Kazuyuki Doi; Takeshi Izawa; Takuichi Fuse; Utako Yamanouchi; Takahiko Kubo; Zenpei Shimatani; Masahiro Yano; Atsushi Yoshimura
Journal:  Genes Dev       Date:  2004-04-12       Impact factor: 11.361

7.  The structure of the FYR domain of transforming growth factor beta regulator 1.

Authors:  María M García-Alai; Mark D Allen; Andreas C Joerger; Mark Bycroft
Journal:  Protein Sci       Date:  2010-07       Impact factor: 6.725

8.  Dynamic regulation of H3K27 trimethylation during Arabidopsis differentiation.

Authors:  Marcel Lafos; Phillip Kroll; Mareike L Hohenstatt; Frazer L Thorpe; Oliver Clarenz; Daniel Schubert
Journal:  PLoS Genet       Date:  2011-04-07       Impact factor: 5.917

9.  Structural and biochemical studies of human lysine methyltransferase Smyd3 reveal the important functional roles of its post-SET and TPR domains and the regulation of its activity by DNA binding.

Authors:  Shutong Xu; Jian Wu; Bingfa Sun; Chen Zhong; Jianping Ding
Journal:  Nucleic Acids Res       Date:  2011-01-25       Impact factor: 16.971

10.  The Arabidopsis SUVR4 protein is a nucleolar histone methyltransferase with preference for monomethylated H3K9.

Authors:  Tage Thorstensen; Andreas Fischer; Silje V Sandvik; Sylvia S Johnsen; Paul E Grini; Gunter Reuter; Reidunn B Aalen
Journal:  Nucleic Acids Res       Date:  2006-10-04       Impact factor: 16.971
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  14 in total

Review 1.  The function of histone lysine methylation related SET domain group proteins in plants.

Authors:  Huiyan Zhou; Yanhong Liu; Yuwei Liang; Dong Zhou; Shuifeng Li; Sue Lin; Heng Dong; Li Huang
Journal:  Protein Sci       Date:  2020-03-19       Impact factor: 6.725

2.  Not all Is SET for Methylation: Evolution of Eukaryotic Protein Methyltransferases.

Authors:  Allyson A Erlendson; Michael Freitag
Journal:  Methods Mol Biol       Date:  2022

3.  SDG102, a H3K36-Methyltransferase-Encoding Gene, Plays Pleiotropic Roles in Growth and Development of Maize (Zea mays L.).

Authors:  Yongjian Li; Weifeng Sun; Zhenhui Wang; Chang Wan; Jun Zhang; Xin Qi; Jian Zhang
Journal:  Int J Mol Sci       Date:  2022-07-05       Impact factor: 6.208

Review 4.  Perspectives for epigenetic editing in crops.

Authors:  S Selma; D Orzáez
Journal:  Transgenic Res       Date:  2021-04-23       Impact factor: 2.788

Review 5.  H3K4 trimethylation dynamics impact diverse developmental and environmental responses in plants.

Authors:  Maryam Foroozani; Matthew P Vandal; Aaron P Smith
Journal:  Planta       Date:  2021-01-02       Impact factor: 4.116

Review 6.  Reprogramming of Histone H3 Lysine Methylation During Plant Sexual Reproduction.

Authors:  Huihui Fang; Yuke Shao; Gang Wu
Journal:  Front Plant Sci       Date:  2021-11-30       Impact factor: 5.753

7.  Genome-Wide Identification and Characterization of SET Domain Family Genes in Brassica napus L.

Authors:  Sarfraz Sehrish; Wahid Sumbal; Meili Xie; Chuanji Zhao; Rong Zuo; Feng Gao; Shengyi Liu
Journal:  Int J Mol Sci       Date:  2022-02-09       Impact factor: 5.923

8.  Identification of Genomic Regions Associated with Agronomic and Disease Resistance Traits in a Large Set of Multiple DH Populations.

Authors:  Kassahun Sadessa; Yoseph Beyene; Beatrice E Ifie; L M Suresh; Michael S Olsen; Veronica Ogugo; Dagne Wegary; Pangirayi Tongoona; Eric Danquah; Samuel Kwame Offei; Boddupalli M Prasanna; Manje Gowda
Journal:  Genes (Basel)       Date:  2022-02-15       Impact factor: 4.096

9.  Nitric Oxide Implication in Potato Immunity to Phytophthora infestans via Modifications of Histone H3/H4 Methylation Patterns on Defense Genes.

Authors:  Andżelika Drozda; Barbara Kurpisz; Magdalena Arasimowicz-Jelonek; Daniel Kuźnicki; Przemysław Jagodzik; Yufeng Guan; Jolanta Floryszak-Wieczorek
Journal:  Int J Mol Sci       Date:  2022-04-06       Impact factor: 5.923

10.  Comprehensive Analysis of the SUV Gene Family in Allopolyploid Brassica napus and Its Diploid Ancestors.

Authors:  Meimei Hu; Mengdi Li; Jianbo Wang
Journal:  Genes (Basel)       Date:  2021-11-23       Impact factor: 4.096
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