Literature DB >> 33387051

H3K4 trimethylation dynamics impact diverse developmental and environmental responses in plants.

Maryam Foroozani1, Matthew P Vandal2, Aaron P Smith3.   

Abstract

MAIN
CONCLUSION: The H3K4me3 histone mark in plants functions in the regulation of gene expression and transcriptional memory, and influences numerous developmental processes and stress responses. Plants execute developmental programs and respond to changing environmental conditions via adjustments in gene expression, which are modulated in part by chromatin structure dynamics. Histone modifications alter chromatin in precise ways on a global scale, having the potential to influence the expression of numerous genes. Trimethylation of lysine 4 on histone H3 (H3K4me3) is a prominent histone modification that is dogmatically associated with gene activity, but more recently has also been linked to gene repression. As in other eukaryotes, the distribution of H3K4me3 in plant genomes suggests it plays a central role in gene expression regulation, however the underlying mechanisms are not fully understood. Transcript levels of many genes related to flowering, root, and shoot development are affected by dynamic H3K4me3 levels, as are those for a number of stress-responsive and stress memory-related genes. This review examines the current understanding of how H3K4me3 functions in modulating plant responses to developmental and environmental cues.

Entities:  

Keywords:  Chromatin; Development; Genome; H3K4me3; Stress

Mesh:

Substances:

Year:  2021        PMID: 33387051     DOI: 10.1007/s00425-020-03520-0

Source DB:  PubMed          Journal:  Planta        ISSN: 0032-0935            Impact factor:   4.116


  120 in total

1.  Methylation of histone H3 Lys 4 in coding regions of active genes.

Authors:  Bradley E Bernstein; Emily L Humphrey; Rachel L Erlich; Robert Schneider; Peter Bouman; Jun S Liu; Tony Kouzarides; Stuart L Schreiber
Journal:  Proc Natl Acad Sci U S A       Date:  2002-06-11       Impact factor: 11.205

2.  Arabidopsis SET DOMAIN GROUP2 is required for H3K4 trimethylation and is crucial for both sporophyte and gametophyte development.

Authors:  Alexandre Berr; Emily J McCallum; Rozenn Ménard; Denise Meyer; Jörg Fuchs; Aiwu Dong; Wen-Hui Shen
Journal:  Plant Cell       Date:  2010-10-29       Impact factor: 11.277

3.  A bivalent chromatin structure marks key developmental genes in embryonic stem cells.

Authors:  Bradley E Bernstein; Tarjei S Mikkelsen; Xiaohui Xie; Michael Kamal; Dana J Huebert; James Cuff; Ben Fry; Alex Meissner; Marius Wernig; Kathrin Plath; Rudolf Jaenisch; Alexandre Wagschal; Robert Feil; Stuart L Schreiber; Eric S Lander
Journal:  Cell       Date:  2006-04-21       Impact factor: 41.582

4.  The Chromatin Factor HNI9 and ELONGATED HYPOCOTYL5 Maintain ROS Homeostasis under High Nitrogen Provision.

Authors:  Fanny Bellegarde; Amel Maghiaoui; Jossia Boucherez; Gabriel Krouk; Laurence Lejay; Liên Bach; Alain Gojon; Antoine Martin
Journal:  Plant Physiol       Date:  2019-03-01       Impact factor: 8.340

5.  ATX-1, an Arabidopsis homolog of trithorax, activates flower homeotic genes.

Authors:  Raul Alvarez-Venegas; Stephane Pien; Monther Sadder; Xiaohong Witmer; Ueli Grossniklaus; Zoya Avramova
Journal:  Curr Biol       Date:  2003-04-15       Impact factor: 10.834

6.  Epigenetic control of a transcription factor at the cross section of two antagonistic pathways.

Authors:  Raul Alvarez-Venegas; Ayed Al Abdallat; Ming Guo; James R Alfano; Zoya Avramova
Journal:  Epigenetics       Date:  2007-05-08       Impact factor: 4.528

Review 7.  Evolution and pleiotropy of TRITHORAX function in Arabidopsis.

Authors:  Zoya Avramova
Journal:  Int J Dev Biol       Date:  2009       Impact factor: 2.203

8.  SET DOMAIN GROUP25 encodes a histone methyltransferase and is involved in FLOWERING LOCUS C activation and repression of flowering.

Authors:  Alexandre Berr; Lin Xu; Juan Gao; Valérie Cognat; Andre Steinmetz; Aiwu Dong; Wen-Hui Shen
Journal:  Plant Physiol       Date:  2009-09-02       Impact factor: 8.340

9.  Methylation patterns of histone H3 Lys 4, Lys 9 and Lys 27 in transcriptionally active and inactive Arabidopsis genes and in atx1 mutants.

Authors:  Raul Alvarez-Venegas; Zoya Avramova
Journal:  Nucleic Acids Res       Date:  2005-09-12       Impact factor: 16.971

Review 10.  The role of plant epigenetics in biotic interactions.

Authors:  Conchita Alonso; Daniela Ramos-Cruz; Claude Becker
Journal:  New Phytol       Date:  2018-08-29       Impact factor: 10.151

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  3 in total

Review 1.  Reprogramming of Histone H3 Lysine Methylation During Plant Sexual Reproduction.

Authors:  Huihui Fang; Yuke Shao; Gang Wu
Journal:  Front Plant Sci       Date:  2021-11-30       Impact factor: 5.753

2.  Involvement of JMJ15 in the dynamic change of genome-wide H3K4me3 in response to salt stress.

Authors:  Yuan Shen; Yuhao Chi; Shun Lu; Huijuan Lu; Lei Shi
Journal:  Front Plant Sci       Date:  2022-09-26       Impact factor: 6.627

3.  LncRNA affects epigenetic reprogramming of porcine embryo development by regulating global epigenetic modification and the downstream gene SIN3A.

Authors:  Daoyu Zhang; Yongfeng Zhou; Rong Huang; Yanhui Zhai; Di Wu; Xinglan An; Sheng Zhang; Lijing Shi; Qi Li; Xiangjie Kong; Hao Yu; Ziyi Li
Journal:  Front Physiol       Date:  2022-09-16       Impact factor: 4.755

  3 in total

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