| Literature DB >> 32134017 |
Ruta Kulkarni1, Meera Modak2, Mrunal Gosavi1, Dileep Wani3, Akhilesh C Mishra4, Vidya A Arankalle1.
Abstract
Background & objectives: Dengue diagnosis is routinely carried out by detection of dengue virus (DENV) antigen NS1 and/or anti-DENV IgM antibodies using enzyme-linked immunosorbent assays (ELISAs) and rapid diagnostic tests (RDTs). This study was aimed at evaluation of quality of diagnostic assays currently in use in India for the identification of DENV infection.Entities:
Keywords: Dengue virus; IgM; NS1; enzyme-linked immunosorbent assay; rapid diagnostic test
Mesh:
Substances:
Year: 2020 PMID: 32134017 PMCID: PMC7055168 DOI: 10.4103/ijmr.IJMR_613_18
Source DB: PubMed Journal: Indian J Med Res ISSN: 0971-5916 Impact factor: 2.375
Diagnosis of dengue virus infection using the evaluated tests
| Diagnostic test | Total number of serum samples tested | Number of samples positive for DENV infection | ||
|---|---|---|---|---|
| NS1, n (%) | IgM, n (%) | Combined diagnosis NS1 and/or IgM, n (%) | ||
| Panbio ELISA | 809 | 158 (19.5) | 231 (28.6) | 312 (38.6) |
| J.Mitra ELISA | 809 | 208 (25.7) | 144 (17.8) | 275 (34.0) |
| J.Mitra RDT | 809 | 181 (22.4) | 89 (11.0) | 226 (27.9) |
| SD BIOLINE RDT | 375 | 101 (26.9) | 76 (20.3) | 143 (38.1) |
RDT, rapid diagnostic test; DENV, dengue virus; ELISA, enzyme-linked immunosorbent assay; SD, standard diagnostics
Comparison of the tests evaluated with the standard test (Panbio ELISA) for diagnosis of dengue virus infection
| Panbio ELISA and J.Mitra ELISA | |||||
|---|---|---|---|---|---|
| Panbio ELISA | J.Mitra ELISA | Number of serum samples | |||
| NS1 | IgM | Combined diagnosis (NS1 and/or IgM) | |||
| Positive | Positive | 156 | 126 | 239 | |
| Positive | Negative | 2 | 105 | 73 | |
| Negative | Positive | 52 | 18 | 36 | |
| Negative | Negative | 599 | 560 | 461 | |
| Total | 809 | 809 | 809 | ||
| Agreement between the tests | |||||
| Per cent agreement | 93.3 | 84.8 | 86.5 | ||
| Kappa value (95% CI) | 0.81 (0.76-0.86) ( | 0.58 (0.51-0.65) ( | 0.71 (0.66-0.76) ( | ||
| Panbio ELISA, J.Mitra RDT and SD BIOLINE RDT | |||||
| Panbio ELISA | J.Mitra RDT | SD BIOLINE RDT | Number of serum samples | ||
| NS1 | IgM | Combined diagnosis (NS1 and/or IgM) | |||
| Positive | Positive | Positive | 82 | 22 | 102 |
| Positive | Positive | Negative | 2 | 14 | 15 |
| Positive | Negative | Positive | 13 | 44 | 30 |
| Positive | Negative | Negative | 5 | 112 | 90 |
| Negative | Positive | Positive | 4 | 2 | 5 |
| Negative | Positive | Negative | 26 | 28 | 29 |
| Negative | Negative | Positive | 2 | 8 | 6 |
| Negative | Negative | Negative | 241 | 145 | 98 |
| Total | 375 | 375 | 375 | ||
| Agreement with Panbio ELISA test | |||||
| Per cent agreement | SD: 96.5 | SD: 63.7 | SD: 69.1 | ||
| J.Mitra: 87.2 | J.Mitra: 50.4 | J.Mitra: 58.9 | |||
| Kappa value (95% CI) | SD: 0.91 (0.86-0.96) ( | SD: 0.28 (0.19-0.38) ( | SD: 0.42 (0.33-0.50) ( | ||
| J.Mitra: 0.69 (0.60-0.77) ( | J.Mitra: 0.02 (0.0-0.12) ( | J.Mitra: 0.22 (0.12-0.31) ( | |||
| Agreement among the RDTs | |||||
| Per cent agreement | 88.5 | 74.9 | 78.7 | ||
| Kappa value (95% CI) | 0.72 (0.64-0.80) ( | 0.18 (0.04-0.33) ( | 0.55 (0.47-0.64) ( | ||
Comparison of performance characteristics of dengue diagnostic tests
| Test | Marker | Panbio ELISA as reference test, % (95% CI) | Bayesian latent class analysis, % (95% CI) | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Sensitivity | Specificity | PPV | NPV | Sensitivity | Specificity | PPV | NPV | ||
| Panbio ELISAa | NS1 | 100 | 100 | 100 | 100 | 84 (78-89) | 100 (99-100) | 99 (96-100) | 96 (94-97) |
| Panbio ELISAa | IgM | 100 | 100 | 100 | 100 | 99 (95-100) | 86 (83-89) | 60 (54-67) | 100 (99-100) |
| Panbio ELISAa | Combined | 100 | 100 | 100 | 100 | 97 (94-99) | 87 (84-90) | 77 (72-81) | 98 (97-99) |
| J.Mitra ELISAa | NS1 | 98.7 (97.0-100) | 92.0 (89.9-94.1) | 75.0 (69.1-80.9) | 99.7 (99.2-100) | 100 (98-100) | 96 (95-98) | 89 (84-93) | 100 (99-100) |
| J.Mitra ELISAa | IgM | 54.5 (48.1-61.0) | 96.9 (95.5-98.3) | 87.5 (82.1-92.9) | 84.2 (81.4-87.0) | 91 (85-95) | 98 (96-99) | 89 (83-94) | 98 (97-99) |
| J.Mitra ELISAa | Combined | 76.6 (71.9-81.3) | 92.8 (90.5-95.0) | 86.9 (82.9-90.9) | 86.3 (83.4-89.2) | 100 (99-100) | 95 (93-97) | 90 (86-93) | 100 (99-100) |
| J.Mitra RDTa | NS1 | 87.3 (82.2-92.5) | 93.4 (91.5-95.3) | 76.2 (70.0-82.4) | 96.8 (95.4-98.2) | 90 (85-94) | 98 (96-99) | 92 (87-96) | 97 (96-98) |
| J.Mitra RDTa | IgM | 22.5 (17.1-27.9) | 93.6 (91.6-95.6) | 58.4 (48.2-68.7) | 75.1 (72.0-78.3) | 38 (30-47) | 95 (93-96) | 61 (50-71) | 88 (85-90) |
| J.Mitra RDTa | Combined | 58.3 (52.9-63.8) | 91.1 (88.6-93.6) | 80.5 (75.4-85.7) | 77.7 (74.3-81.1) | 74 (68-79) | 92 (90-94) | 81 (75-86) | 89 (86-91) |
| SD RDTb | NS1 | 93.1 (88.2-98.0) | 97.8 (96.1-99.5) | 94.1 (89.4-98.7) | 97.4 (95.6-99.3) | 94 (88-98) | 100 (98-100) | 99 (95-100) | 98 (95-99) |
| SD RDTb | IgM | 34.4 (27.7-41.1) | 94.5 (91.2-97.8) | 86.8 (79.2-94.4) | 57.9 (52.3-63.5) | 58 (49-67) | 98 (96-100) | 95 (87-99) | 83 (78-87) |
| SD RDTb | Combined | 55.7 (49.4-62.0) | 92.0 (87.5-96.5) | 92.3 (87.9-96.7) | 54.7 (48.3-61.1) | 94 (88-97) | 95 (91-97) | 92 (86-96) | 96 (93-98) |
aNumber of samples tested=809; bNumber of samples tested=375. PPV, positive predictive value; NPV, negative predictive value
Detection of primary and secondary dengue virus infections by the evaluated tests
| Type of infection | Number of samples positive (%) | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| No. of samples | Panbio ELISA | J.Mitra ELISA | J.Mitra RDT | No. of samples | SD BIOLINE RDT | |||||||||
| NS1 | IgM | NS1 and/or IgM | NS1 | IgM | NS1 and/or IgM | NS1 | IgM | NS1 and/or IgM | NS1 | IgM | NS1 and/or IgM | |||
| Primary | 113 | 72 (63.7) | 65 (57.5) | 113 (100) | 80 (70.8) | 33 (29.2) | 91 (80.5) | 67 (59.3) | 14 (12.4) | 72 (63.7) | 93 | 51 (54.8) | 25 (26.9) | 63 (67.7) |
| Secondary | 79 | 40 (50.6) | 73 (92.4) | 79 (100) | 51 (64.6) | 53 (67.1) | 67 (84.8) | 43 (54.4) | 19 (24.1) | 47 (59.5) | 73 | 38 (52.1) | 23 (31.5) | 44 (60.3) |
| Total | 192 | 112 | 138 | 192 | 131 | 86 | 158 | 110 | 33 | 119 | 166 | 89 | 48 | 107 |
Influence of dengue virus serotype on NS1 detection by different diagnostic tests
| DENV serotype | Number of samples positive (%) | |||||
|---|---|---|---|---|---|---|
| No. of samples | Panbio ELISA | J.Mitra ELISA | J.Mitra RDT | No. of samples | SD BIOLINE RDT | |
| DENV-1 | 11 | 10 (90.9) | 11 (100) | 8 (72.7) | 2 | 2 (100) |
| DENV-2 | 20 | 19 (95.0) | 20 (100) | 16 (80.0) | 9 | 7 (77.8) |
| DENV-3 | 12 | 12 (100) | 12 (100) | 12 (100) | 3 | 3 (100) |
| DENV-4 | 9 | 8 (88.9) | 9 (100) | 7 (77.8) | 5 | 5 (100) |
| Total | 52 | 49 (94.2) | 52 (100) | 43 (82.7) | 19 | 17 (89.5) |