Literature DB >> 32127719

Accurate phase retrieval of complex 3D point spread functions with deep residual neural networks.

Leonhard Möckl1, Petar N Petrov1, W E Moerner1.   

Abstract

Phase retrieval, i.e., the reconstruction of phase information from intensity information, is a central problem in many optical systems. Imaging the emission from a point source such as a single molecule is one example. Here, we demonstrate that a deep residual neural net is able to quickly and accurately extract the hidden phase for general point spread functions (PSFs) formed by Zernike-type phase modulations. Five slices of the 3D PSF at different focal positions within a two micrometer range around the focus are sufficient to retrieve the first six orders of Zernike coefficients.
Copyright © 2019 Author(s).

Entities:  

Year:  2019        PMID: 32127719      PMCID: PMC7043838          DOI: 10.1063/1.5125252

Source DB:  PubMed          Journal:  Appl Phys Lett        ISSN: 0003-6951            Impact factor:   3.791


  22 in total

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Journal:  Methods Cell Biol       Date:  2013       Impact factor: 1.441

2.  Wavefront reconstruction with artificial neural networks.

Authors:  Hong Guo; Nina Korablinova; Qiushi Ren; Josef Bille
Journal:  Opt Express       Date:  2006-07-10       Impact factor: 3.894

3.  Computational correction of spatially variant optical aberrations in 3D single-molecule localization microscopy.

Authors:  T Yan; C J Richardson; M Zhang; A Gahlmann
Journal:  Opt Express       Date:  2019-04-29       Impact factor: 3.894

4.  Measurement-based estimation of global pupil functions in 3D localization microscopy.

Authors:  Petar N Petrov; Yoav Shechtman; W E Moerner
Journal:  Opt Express       Date:  2017-04-03       Impact factor: 3.894

5.  Deep learning wavefront sensing.

Authors:  Yohei Nishizaki; Matias Valdivia; Ryoichi Horisaki; Katsuhisa Kitaguchi; Mamoru Saito; Jun Tanida; Esteban Vera
Journal:  Opt Express       Date:  2019-01-07       Impact factor: 3.894

6.  Accuracy of correction in modal sensorless adaptive optics.

Authors:  Aurélie Facomprez; Emmanuel Beaurepaire; Delphine Débarre
Journal:  Opt Express       Date:  2012-01-30       Impact factor: 3.894

7.  Machine learning for improved image-based wavefront sensing.

Authors:  Scott W Paine; James R Fienup
Journal:  Opt Lett       Date:  2018-03-15       Impact factor: 3.776

8.  High precision wavefront control in point spread function engineering for single emitter localization.

Authors:  M Siemons; C N Hulleman; R Ø Thorsen; C S Smith; S Stallinga
Journal:  Opt Express       Date:  2018-04-02       Impact factor: 3.894

9.  Correcting field-dependent aberrations with nanoscale accuracy in three-dimensional single-molecule localization microscopy.

Authors:  Alex von Diezmann; Maurice Y Lee; Matthew D Lew; W E Moerner
Journal:  Optica       Date:  2015-11-19       Impact factor: 11.104

10.  Optimal point spread function design for 3D imaging.

Authors:  Yoav Shechtman; Steffen J Sahl; Adam S Backer; W E Moerner
Journal:  Phys Rev Lett       Date:  2014-09-26       Impact factor: 9.161

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  5 in total

1.  Addressing systematic errors in axial distance measurements in single-emitter localization microscopy.

Authors:  Petar N Petrov; W E Moerner
Journal:  Opt Express       Date:  2020-06-22       Impact factor: 3.894

Review 2.  Deep learning in single-molecule microscopy: fundamentals, caveats, and recent developments [Invited].

Authors:  Leonhard Möckl; Anish R Roy; W E Moerner
Journal:  Biomed Opt Express       Date:  2020-02-27       Impact factor: 3.732

Review 3.  Super-resolution Microscopy with Single Molecules in Biology and Beyond-Essentials, Current Trends, and Future Challenges.

Authors:  Leonhard Möckl; W E Moerner
Journal:  J Am Chem Soc       Date:  2020-10-09       Impact factor: 15.419

Review 4.  Light Sheet Illumination for 3D Single-Molecule Super-Resolution Imaging of Neuronal Synapses.

Authors:  Gabriella Gagliano; Tyler Nelson; Nahima Saliba; Sofía Vargas-Hernández; Anna-Karin Gustavsson
Journal:  Front Synaptic Neurosci       Date:  2021-11-24

5.  Jitter-Robust Phase Retrieval Wavefront Sensing Algorithms.

Authors:  Liang Guo; Guohao Ju; Boqian Xu; Xiaoquan Bai; Qingyu Meng; Fengyi Jiang; Shuyan Xu
Journal:  Sensors (Basel)       Date:  2022-07-26       Impact factor: 3.847

  5 in total

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