Literature DB >> 25302889

Optimal point spread function design for 3D imaging.

Yoav Shechtman1, Steffen J Sahl1, Adam S Backer2, W E Moerner1.   

Abstract

To extract from an image of a single nanoscale object maximum physical information about its position, we propose and demonstrate a framework for pupil-plane modulation for 3D imaging applications requiring precise localization, including single-particle tracking and superresolution microscopy. The method is based on maximizing the information content of the system, by formulating and solving the appropriate optimization problem--finding the pupil-plane phase pattern that would yield a point spread function (PSF) with optimal Fisher information properties. We use our method to generate and experimentally demonstrate two example PSFs: one optimized for 3D localization precision over a 3  μm depth of field, and another with an unprecedented 5  μm depth of field, both designed to perform under physically common conditions of high background signals.

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Year:  2014        PMID: 25302889      PMCID: PMC4381866          DOI: 10.1103/PhysRevLett.113.133902

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  28 in total

1.  Precise nanometer localization analysis for individual fluorescent probes.

Authors:  Russell E Thompson; Daniel R Larson; Watt W Webb
Journal:  Biophys J       Date:  2002-05       Impact factor: 4.033

2.  Three-dimensional tracking of single mRNA particles in Saccharomyces cerevisiae using a double-helix point spread function.

Authors:  Michael A Thompson; Jason M Casolari; Majid Badieirostami; Patrick O Brown; W E Moerner
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-04       Impact factor: 11.205

3.  Localization accuracy in single-molecule microscopy.

Authors:  Raimund J Ober; Sripad Ram; E Sally Ward
Journal:  Biophys J       Date:  2004-02       Impact factor: 4.033

Review 4.  Nanoscale three-dimensional single particle tracking.

Authors:  Aurélie Dupont; Don C Lamb
Journal:  Nanoscale       Date:  2011-09-30       Impact factor: 7.790

5.  Experimental characterization of 3D localization techniques for particle-tracking and super-resolution microscopy.

Authors:  Michael J Mlodzianoski; Manuel F Juette; Glen L Beane; Joerg Bewersdorf
Journal:  Opt Express       Date:  2009-05-11       Impact factor: 3.894

Review 6.  Fluorophore localization algorithms for super-resolution microscopy.

Authors:  Alex Small; Shane Stahlheber
Journal:  Nat Methods       Date:  2014-03       Impact factor: 28.547

Review 7.  The role of molecular dipole orientation in single-molecule fluorescence microscopy and implications for super-resolution imaging.

Authors:  Mikael P Backlund; Matthew D Lew; Adam S Backer; Steffen J Sahl; W E Moerner
Journal:  Chemphyschem       Date:  2013-12-30       Impact factor: 3.102

8.  Isotropic 3D Super-resolution Imaging with a Self-bending Point Spread Function.

Authors:  Shu Jia; Joshua C Vaughan; Xiaowei Zhuang
Journal:  Nat Photonics       Date:  2014       Impact factor: 38.771

9.  Video-rate nanoscopy using sCMOS camera-specific single-molecule localization algorithms.

Authors:  Fang Huang; Tobias M P Hartwich; Felix E Rivera-Molina; Yu Lin; Whitney C Duim; Jane J Long; Pradeep D Uchil; Jordan R Myers; Michelle A Baird; Walther Mothes; Michael W Davidson; Derek Toomre; Joerg Bewersdorf
Journal:  Nat Methods       Date:  2013-05-26       Impact factor: 28.547

10.  Ultrahigh accuracy imaging modality for super-localization microscopy.

Authors:  Jerry Chao; Sripad Ram; E Sally Ward; Raimund J Ober
Journal:  Nat Methods       Date:  2013-03-03       Impact factor: 28.547

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  62 in total

1.  PhlatCam: Designed Phase-Mask Based Thin Lensless Camera.

Authors:  Vivek Boominathan; Jesse K Adams; Jacob T Robinson; Ashok Veeraraghavan
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2020-04-23       Impact factor: 6.226

Review 2.  Three-Dimensional Localization of Single Molecules for Super-Resolution Imaging and Single-Particle Tracking.

Authors:  Lexy von Diezmann; Yoav Shechtman; W E Moerner
Journal:  Chem Rev       Date:  2017-02-02       Impact factor: 60.622

3.  Determination of localization accuracy based on experimentally acquired image sets: applications to single molecule microscopy.

Authors:  Amir Tahmasbi; E Sally Ward; Raimund J Ober
Journal:  Opt Express       Date:  2015-03-23       Impact factor: 3.894

4.  Resolving Cytosolic Diffusive States in Bacteria by Single-Molecule Tracking.

Authors:  Julian Rocha; Jacqueline Corbitt; Ting Yan; Charles Richardson; Andreas Gahlmann
Journal:  Biophys J       Date:  2019-04-09       Impact factor: 4.033

5.  Single-particle tracking photoactivated localization microscopy of membrane proteins in living plant tissues.

Authors:  Vincent Bayle; Jean-Bernard Fiche; Claire Burny; Matthieu Pierre Platre; Marcelo Nollmann; Alexandre Martinière; Yvon Jaillais
Journal:  Nat Protoc       Date:  2021-02-24       Impact factor: 13.491

6.  Fundamental precision bounds for three-dimensional optical localization microscopy using self-interference digital holography.

Authors:  Abhijit Marar; Peter Kner
Journal:  Biomed Opt Express       Date:  2020-12-03       Impact factor: 3.732

7.  Interference based localization of single emitters.

Authors:  Amihai Meiri; Carl G Ebeling; Jason Martineau; Zeev Zalevsky; Jordan M Gerton; Rajesh Menon
Journal:  Opt Express       Date:  2017-07-24       Impact factor: 3.894

8.  Single-Molecule Tracking and Its Application in Biomolecular Binding Detection.

Authors:  Cong Liu; Yen-Liang Liu; Evan P Perillo; Andrew K Dunn; Hsin-Chih Yeh
Journal:  IEEE J Sel Top Quantum Electron       Date:  2016-05-17       Impact factor: 4.544

9.  Three-Dimensional Single-Molecule Localization Microscopy in Whole-Cell and Tissue Specimens.

Authors:  Sheng Liu; Hyun Huh; Sang-Hyuk Lee; Fang Huang
Journal:  Annu Rev Biomed Eng       Date:  2020-04-03       Impact factor: 9.590

Review 10.  Single-molecule spectroscopy and imaging over the decades.

Authors:  W E Moerner; Yoav Shechtman; Quan Wang
Journal:  Faraday Discuss       Date:  2015-11-30       Impact factor: 4.008

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