Literature DB >> 32123337

Heteromeric three-stranded coiled coils designed using a Pb(II)(Cys)3 template mediated strategy.

Audrey E Tolbert1, Catherine S Ervin1, Leela Ruckthong2, Thomas J Paul3, Vindi M Jayasinghe-Arachchige3, Kosh P Neupane1, Jeanne A Stuckey4, Rajeev Prabhakar3, Vincent L Pecoraro5,6.   

Abstract

Three-stranded coiled coils are peptide structures constructed from amphipathic heptad repeats. Here we show that it is possible to form pure heterotrimeric three-stranded coiled coils by combining three distinct characteristics: (1) a cysteine sulfur layer for metal coordination, (2) a thiophilic, trigonal pyramidal metalloid (Pb(II)) that binds to these sulfurs and (3) an adjacent layer of reduced steric bulk generating a cavity where water can hydrogen bond to the cysteine sulfur atoms. Cysteine substitution in an a site yields Pb(II)A2B heterotrimers, while d sites provide pure Pb(II)C2D or Pb(II)CD2 scaffolds. Altering the metal from Pb(II) to Hg(II) or shifting the relative position of the sterically less demanding layer removes heterotrimer specificity. Because only two of the eight or ten hydrophobic layers are perturbed, catalytic sites can be introduced at other regions of the scaffold. A Zn(II)(histidine)3(H2O) centre can be incorporated at a remote location without perturbing the heterotrimer selectivity, suggesting a unique strategy to prepare dissymmetric catalytic sites within self-assembling de novo-designed proteins.

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Year:  2020        PMID: 32123337      PMCID: PMC7169047          DOI: 10.1038/s41557-020-0423-6

Source DB:  PubMed          Journal:  Nat Chem        ISSN: 1755-4330            Impact factor:   24.427


  33 in total

1.  Effects of side-chain characteristics on stability and oligomerization state of a de novo-designed model coiled-coil: 20 amino acid substitutions in position "d".

Authors:  B Tripet; K Wagschal; P Lavigne; C T Mant; R S Hodges
Journal:  J Mol Biol       Date:  2000-07-07       Impact factor: 5.469

2.  Solution structure and dynamics of a de novo designed three-helix bundle protein.

Authors:  S T Walsh; H Cheng; J W Bryson; H Roder; W F DeGrado
Journal:  Proc Natl Acad Sci U S A       Date:  1999-05-11       Impact factor: 11.205

3.  Designing functional metalloproteins: from structural to catalytic metal sites.

Authors:  Melissa L Zastrow; Vincent L Pecoraro
Journal:  Coord Chem Rev       Date:  2013-09       Impact factor: 22.315

4.  From coiled coils to small globular proteins: design of a native-like three-helix bundle.

Authors:  J W Bryson; J R Desjarlais; T M Handel; W F DeGrado
Journal:  Protein Sci       Date:  1998-06       Impact factor: 6.725

Review 5.  Protein design: a hierarchic approach.

Authors:  J W Bryson; S F Betz; H S Lu; D J Suich; H X Zhou; K T O'Neil; W F DeGrado
Journal:  Science       Date:  1995-11-10       Impact factor: 47.728

6.  Retrostructural analysis of metalloproteins: application to the design of a minimal model for diiron proteins.

Authors:  A Lombardi; C M Summa; S Geremia; L Randaccio; V Pavone; W F DeGrado
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-06       Impact factor: 11.205

7.  An artificial di-iron oxo-protein with phenol oxidase activity.

Authors:  Marina Faiella; Concetta Andreozzi; Rafael Torres Martin de Rosales; Vincenzo Pavone; Ornella Maglio; Flavia Nastri; William F DeGrado; Angela Lombardi
Journal:  Nat Chem Biol       Date:  2009-11-08       Impact factor: 15.040

8.  De novo design of catalytic proteins.

Authors:  J Kaplan; W F DeGrado
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-03       Impact factor: 11.205

9.  Hydrolytic catalysis and structural stabilization in a designed metalloprotein.

Authors:  Melissa L Zastrow; Anna F A Peacock; Jeanne A Stuckey; Vincent L Pecoraro
Journal:  Nat Chem       Date:  2011-11-27       Impact factor: 24.427

10.  Alteration of the oxygen-dependent reactivity of de novo Due Ferri proteins.

Authors:  Amanda J Reig; Marcos M Pires; Rae Ana Snyder; Yibing Wu; Hyunil Jo; Daniel W Kulp; Susan E Butch; Jennifer R Calhoun; Thomas Szyperski; Thomas G Szyperski; Edward I Solomon; William F DeGrado
Journal:  Nat Chem       Date:  2012-09-23       Impact factor: 24.427

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  5 in total

1.  Synergistic Interactions Are Prevalent in Catalytic Amyloids.

Authors:  Liam R Marshall; Megha Jayachandran; Zsofia Lengyel-Zhand; Caroline M Rufo; Austin Kriews; Min-Chul Kim; Ivan V Korendovych
Journal:  Chembiochem       Date:  2020-06-09       Impact factor: 3.164

2.  De novo metalloprotein design.

Authors:  Matthew J Chalkley; Samuel I Mann; William F DeGrado
Journal:  Nat Rev Chem       Date:  2021-12-06       Impact factor: 34.571

Review 3.  Protein Assembly by Design.

Authors:  Jie Zhu; Nicole Avakyan; Albert Kakkis; Alexander M Hoffnagle; Kenneth Han; Yiying Li; Zhiyin Zhang; Tae Su Choi; Youjeong Na; Chung-Jui Yu; F Akif Tezcan
Journal:  Chem Rev       Date:  2021-08-18       Impact factor: 72.087

4.  The pH-Induced Selectivity Between Cysteine or Histidine Coordinated Heme in an Artificial α-Helical Metalloprotein.

Authors:  Karl J Koebke; Toni Kühl; Elisabeth Lojou; Borries Demeler; Barbara Schoepp-Cothenet; Olga Iranzo; Vincent L Pecoraro; Anabella Ivancich
Journal:  Angew Chem Int Ed Engl       Date:  2020-12-23       Impact factor: 15.336

5.  Metal-Templated Design of Chemically Switchable Protein Assemblies with High-Affinity Coordination Sites.

Authors:  Albert Kakkis; Derek Gagnon; Julian Esselborn; R David Britt; F Akif Tezcan
Journal:  Angew Chem Int Ed Engl       Date:  2020-09-28       Impact factor: 16.823

  5 in total

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