Literature DB >> 32095470

Screening study for genetic polymorphisms affecting pharmacokinetics of talniflumate.

Li Hua Jin1, Bo-Hyung Kim1, Ji Hyun Lee1, Kidong Lee2, KyuBum Kwack2, Sung-Vin Yim1.   

Abstract

Talniflumate is a phthalidyl ester of niflumic acid, which has potent analgesic and anti-inflammatory effects and is widely used to treat inflammatory disorders, such as rheumatoid arthritis. To screen the possible genetic factors affecting the pharmacokinetics (PK) of talniflumate, 23 male Korean volunteers were enrolled from two separate bioequivalence studies. All subjects received 740 mg (two tablets) talniflumate in a standard 2×2 cross-over model in a randomized order. For the genetic study, PK parameters of the reference drug were used. We used Illumina Human610Quad v1.0 DNA Analysis BeadChip for whole genome single nucleotide polymorphism (SNP) analysis and whole genome genotyping data were processed by linear regression analysis for PK parameters. Whole genome analysis revealed 1498 significant SNPs (P < 0.0001) for Cmax, 65 significant SNPs (P < 0.0001) for T max, and 1491 significant SNPs (P < 0.0001) for AUC inf. For clinical pharmacological purposes, we selected SNPs from drug metabolizing enzymes and transporters, and analyzed the PK parameters of various genotypes. Two SNPs (rs11165069 from ABCA4 (p=0.00002); rs17847036 from CYP2C9 (p=0.000001)) showed significant associations with talniflumate C max. In the T max group, two SNPs (rs3787555 from CYP24A1 (p=0.00035); rs2275034 from ABCA4 (p=0.000587)) showed significant associations with talniflumate T max. In the AUC inf group, two SNPs (rs11165069 from ABCA4 (p=0.00002); rs12461006 from SLC1A6 (p=0.00008)) exhibited significant associations with talniflumate absorption. These results show that genetic factors could affect the PK parameters, and provide information that may be used in the development of personalized talniflumate therapy.
Copyright © 2017 Translational and Clinical Pharmacology.

Entities:  

Keywords:  Drug metabolizing enzyme; Pharmacogenomics; Pharmacokinetics; Single nucleotide polymorphism; Talniflumate

Year:  2017        PMID: 32095470      PMCID: PMC7033407          DOI: 10.12793/tcp.2017.25.4.166

Source DB:  PubMed          Journal:  Transl Clin Pharmacol        ISSN: 2289-0882


Introduction

Talniflumate, 3-pyridinecarboxylic acid 2-{[(3-trifluoromethyl) phenyl]amino}-1,3-dihydro-3-oxo-1-soenzofuranyl ester, is a phthalidyl ester of niflumic acid and is currently used to treat osteoarthritis and rheumatoid arthritis.[12] Niflumic acid shows rapid absorption followed by extensive metabolism, involving hydroxylation or glucuronidation.[3] However, the occurrence of side effects such as gastrointestinal irritation has been reported both in experimental animals and in clinical use. In order to lower ulcergenic activity, talniflumate was synthesized by esterification of the carboxyl group of niflumic acid.[4] Many genetic and non-genetic factors such as age, sex, life style, organ function, concomitant therapy, and the nature of the disease influence the effects of medications.[5] Following the Human Genome Project, it is understood that genetic factors can influence the response of an individual to a drug.[6] In clinical pharmacogenomics, drug-metabolizing enzymes.[78] drug transporters.[9] and other genes have been known to influence the individual differences in drug response. Single nucleotide polymorphisms (SNPs) are the most common type of genetic variation, and are proven to significantly affect drug absorption, distribution, biotransformation, and excretion.[10] Our previous studies showed that the pharmacokinetics (PK) of simvastatin and pioglitazone are affected by the genotype of each individual.[1112] The purpose of this study was to screen possible candidate genes affecting the PK of talniflumate. A total of 23 male Korean volunteers were recruited from two bioequivalence studies after approval by the Institutional Review Board (IRB) of Kyung Hee University Hospital. In this study, DNA from each subject was analyzed using Illumina Human610Quad v1.0 DNA Analysis BeadChip. Linear regression analysis was performed for significant SNPs affecting PK parameters, such as maximum measured plasma concentration (Cmax), time of the maximum measured plasma concentration (Tmax), and area under the plasma concentration-time curve from zero to infinity (AUC). For clinical pharmacological purposes, further analysis was performed on significant SNPs encoding phase I and II drug metabolizing enzymes to examine their effect on the PK of talniflumate.

Methods

Subjects

Volunteers were healthy Korean males who participated in two talniflumate bioequivalence tests at Kyung Hee Clinical Medical Research Institute of Kyung Hee University Hospital. The clinical protocol was approved by the IRB of Kyung Hee University Hospital and volunteers were recruited by direct call. Twenty-three out of 60 subjects from these previous tests participated in this pharmacogenetics study after providing written informed consent. The demographic characteristics of the volunteers are summarized in Table 1. Subjects ranged in age from 20 to 35 years (26 ± 3.6 years), in weight from 57.0 to 90.0 kg (68.7 ± 8.3 kg), and in height from 160.0 to 184.0 cm (173.3 ± 4.8 cm) (Table 1).
Table 1

Demographic characteristics and reference talniflumate pharmacokinetic parameters of volunteers

NO.AgeWeight/kgHeight/cmAUCtAUCinfCmaxTmax
T12566180906.13999.72159.446.0
T22690184622.32622.32123.954.0
T32669175779.54779.54145.574.0
T428751712347.192443.90437.403.0
T526641681517.401593.58250.042.5
T62561171517.70583.46113.532.0
T72866160472.36472.36137.561.5
T820571711062.671143.30239.894.0
T924581741343.761397.23349.842.0
T1024681731478.441589.52218.996.0
T1122721741984.332102.38357.114.0
T1230681701120.511201.74257.673.0
T1324851761493.981571.46394.484.0
T142262170836.85882.83164.703.0
T1522711771087.641087.64178.063.0
T163066175458.10517.7487.993.0
T173580176600.89152.32152.322.5
T182773178628.44628.44193.061.5
T1934701681798.921901.22489.931.5
T202668174501.71501.71145.152.5
T212461172447.39545.75235.832.5
T222558173596.64596.64125.062.0
T2325731771743.962007.03355.202.5
Mean±S.D26±3.668.7±8.3173.3±4.81058.6±557.11100.9±621.9230.9±113.53.0±1.2

Abbreviations: Cmax, maximum measured plasma concentration; Tmax, time of the maximum measured plasma concentration; AUCt, area under the plasma concentration-time curve from time zero to time of last measurable concentration; AUCinf, area under the plasma concentration-time curve from zero to infinity; SD, standard deviation.

Previous bioequivalence studies

Previous studies were based on two talniflumate bioequivalence tests. Each bioequivalence study of two 370 mg talniflumate formulations (reference drug, Somalgen tablet 370 mg, Kunhwa Co., Ltd.) was conducted in healthy male Korean volunteers after a single dose administration in a randomized cross-over study with a washout period of at least one week. The subjects were hospitalized (Kyung Hee University Hospital, Seoul, Korea) and fasted overnight (10 h) and for 4 h after each drug administration. The doses were administered at 8.00 a.m. of each dosing day along with 240 ml of tap water. No food was allowed until 4 h after dose administration. Approximately 7 ml of blood for talniflumate and active metabolite assays were drawn into heparinized tubes through indwelling cannula before (0 h) and at 0.5, 1, 1.5, 2, 2.5, 3, 4, 6, 9, 12, 15 h after dosing. Blood samples were centrifuged at 3,000 rpm for 10 min; plasma was separated and kept frozen at −70℃ until assayed. Plasma was analyzed for talniflumate concentration using a validated high-performance liquid chromatography method.

Pharmacokinetics analysis

PK parameters (Cmax, Tmax, AUCt and AUCinf) were calculated by noncompartmental models in WinNonlin v5.2 (Table 1).

DNA extraction

DNA extraction was performed as previously described.[11] From May to August 2008, blood samples were obtained from 23 participants. After obtaining informed consent, approximately 10 ml of whole blood was collected from each participant. Blood samples were drawn into sterile tubes containing ethylenediaminetetraacetic acid (EDTA) and stored at −70℃ until the isolation of genomic DNA by a standard phenol chloroform extraction method.

Genotyping

SNPs of 23 healthy male volunteers were analyzed by Standard Illumina procedures using Illumina BeadStation 500G (Illumina Human610Quad v1.0 DNA Analysis BeadChip) as previously described.[1112] Intensity files (*.idat) were processed by BeadStudio GT module 3.3.4 with default analysis settings. Each SNP was analyzed independently to cluster and identify genotypes. Genotype calls were generated by comparing experimental data with those in the supplied cluster file (*.egt). The SNP set was filtered on the basis of genotype call rates (≥ 95%), and minor allele frequency (MAF ≥ 0.05).

Statistical analysis & data analysis

Statistical analysis was performed as previously described.[1112] Hardy Weinberg equilibrium (HWE) was calculated for individual SNPs using an exact test. All of the SNPs reported in this manuscript have HWE P-values > 0.001. To calculate the degree (Beta), 95% confidence intervals (CI) and P-value while controlling for age, height and weight as covariants in a linear regression analysis with significant SNPs on individual PK parameters of talniflumate, unadjusted genotypic association with additive, dominant and recessive models were tested by calculating the Beta and P-value using PLINK version 1.06 (Shaun Purcell, USA). When the additive model was used, each genotype was independently coded as 0, 1, or 2 and analyzed. In the dominant model, a homozygote major allele and another two genotypes were coded as 0 and 1 and analyzed. In the recessive model, a homozygote minor allele and another two genotypes were coded a 0 and 1 and analyzed. After filtering, SNPs were analyzed on chromosome 1 through chromosome 22 for each group. Significant SNPs were identified from each PK parameter (Cmax, Tmax and AUCinf). These included SNPs of phase I and II drug metabolizing enzymes, which were selected to further analyze their effect on the PK parameters (two SNPs in Cmax, two SNPs in Tmax and two SNPs in AUCinf).

Results

The PK parameters of talniflumate are shown in Table 1. Cmax is 230.9 ± 113.5 µg/L, Tmax is 3.0 ± 1.2 h, AUCt is 1058.6 ± 557.1 µg·h/L, and AUCinf is 1100 ± 621.9 µg/L. These data were used for linear regression analysis.

SNP analysis

Linear regression analysis was performed on the PK parameters of talniflumate (Cmax, Tmax, and AUCinf). In this analysis, 25,361 significant SNPs in the Cmax group, 24,067 significant SNPs in the Tmax group, and 23,604 significant SNPs in the AUCinf group showed significant associations (P<0.05). Among those significant SNPs, 1,498 SNPs from the Cmax group, 65 SNPs from the Tmax group, and 1,491 SNPs from the AUCinf group showed highly significant associations with each parameter (Table 2, 3 and 4, P<0.0001). All data were adjusted for age, height, and weight. For clinical pharmacological purposes, significant SNPs encoding phase I and II drug metabolizing enzymes were selected for further analysis.
Table 2

Highly significant SNPs identified in Cmax group following regression analysis (P<0.0001)

NameChrGeneLocationg1n1m1s1g2n2m2s2P VALUE
rs111650691ABCA4intronCC22175.4095.28TC1831.520.000001
rs76376823SLC9A10intronAA22175.4095.28AG1831.520.000001
rs42344093SLC9A10intronAA22175.4095.28AC1831.520.000001
rs44341233SLC9A10missenseAA22175.4095.28AG1831.520.000001
rs174462823SLC9A10intronAA22175.4095.28AG1831.520.000001
rs229155012ABCC9synonymousCC22175.4095.28TC1831.520.000001
rs105164017ABCC3synonymousAA22175.4095.28AG1831.520.000001
rs75722019SLC25A42intronCC22175.4095.28TC1831.520.000001
rs1215089019SLC7A9synonymousAA22175.4095.28AG1831.520.000001
rs1772410420SLC9A8intronAA22175.4095.28AG1831.520.000001
rs67818443SLC9A10missenseTG1831.52TT22175.4095.280.000001
rs98557553SLC9A10intronAG1831.52GG22175.4095.280.000001
rs46461965SLC22A4intronAG1831.52GG22175.4095.280.000001
rs1784703610CYP2C9synonymousAG1831.52GG22175.4095.280.000001
rs724839919SLC25A42intronAG1831.52GG22175.4095.280.000001
rs1041797419SLC25A423UTRTC1831.52TT22175.4095.280.000001
rs21509616ABCC1intronTC3527.07264.40TT20155.4573.410.000015

Abbreviations: Chr, chromosome; N, number; g1, genotype 1; n1, number 1; s1, standard deviation 1; g2, genotype 2; n2, number 2; s2, standard deviation 2. *Table only shows several significant SNPs from a total of 1498 highly significant SNPs.

Table 3

Highly significant SNPs identified in Tmax group following regression analysis (P<0.0001)

NamechrGeneLocationg1n1m1s1g2n2m2s2g3n3m3s3P VALUE
rs20722197DNAH11intronAC46.000.00CC192.840.940.00000
rs208478916A2BP1intronAA36.000.00AG25.001.41GG182.780.930.00000
rs800833314RAD51L1intronAA182.780.93AG55.600.890.00001
rs43701524LOC729112intronAA132.460.85AG84.251.16GG26.000.000.00001
rs7702975CDH183flankingCC26.000.00TC35.331.15TT182.780.930.00001
rs1089978610RASGEF1AintronAA75.001.29AG103.100.91GG62.000.450.00001
rs250385310RASGEF1AintronAA75.001.29AG113.050.88GG51.900.420.00001
rs378183211SORL1intronGG82.130.64TG103.501.15TT55.201.100.00002
rs24526004PDLIM5missenseCC62.080.38TC143.391.16TT36.000.000.00002
rs77947977CACNA2D1intronAA114.551.21AG122.330.750.00003
rs65342954LOC729112intronCC102.250.79TC103.951.21TT35.331.150.00004
rs11580244LOC729112intronCC35.331.15TC103.951.21TT102.250.790.00004
rs126462484LOC729112intronAA102.250.79AG103.951.21GG35.331.150.00004
rs131195234LOC729112intronCC102.250.79TC103.951.21TT35.331.150.00004
rs124039331C1orf125intronAA132.540.85AG84.131.36GG26.000.000.00004
rs378183411SORL1intronAA92.170.61AG113.861.27GG35.331.150.00004
rs1712552311SORL1intronAA92.170.61AG113.861.27GG35.331.150.00004
rs1228733911SORL1intronCC35.331.15TC113.861.27TT92.170.610.00004
rs72207416XYLT1intronCC26.000.00TC103.951.30TT112.410.800.00005
rs68487304MISTintronGG26.000.00TG54.501.50TT162.720.930.00005
rs1879857IGF2BP3intronCC16.00TC64.831.33TT162.690.930.00006
rs77286045SLIT3intronCC122.540.89TC73.641.31TT45.501.000.00007
rs5328418DLC1missenseCC55.201.10TC123.291.16TT62.080.740.00008
rs21366382CDKL4intronCC142.570.83TC84.501.41TT16.000.00008
rs230267716RPGRIP1LmissenseCC182.830.97TC55.401.340.00009
rs993480016RPGRIP1LintronTC55.401.34TT182.830.970.00009

Abbreviations: Chr, chromosome; N, number; g1, genotype 1; n1, number 1; s1, standard deviation 1; g2, genotype 2; n2, number 2; s2, standard deviation 2; g3, genotype 3; n3, number 3; s3; standard deviation. 3 *Table only shows several SNPs from a total of 65 highly significant SNPs.

Table 4

Highly significant SNPs identified in AUCinf group following regression analysis (P<0.0001)

NamechrGeneLocationg1n1m1s1g2n2m2s2P VALUE
rs111650691ABCA4intronCC22908.30573.63TC14073.420.00002
rs105164017ABCC3synonymousAA22908.30573.63AG14073.420.00002
rs229155012ABCC9synonymousCC22908.30573.63TC14073.420.00002
rs1784703610CYP2C9synonymousAG14073.42GG22908.30573.630.00002
rs1246100619SLC1A6intronAG23049.931447.43GG21855.06529.170.00008
rs46461965SLC22A4intronAG14073.42GG22908.30573.630.00002
rs75722019SLC25A42intronCC22908.30573.63TC14073.420.00002
rs724839919SLC25A42intronAG14073.42GG22908.30573.630.00002
rs1041797419SLC25A423UTRTC14073.42TT22908.30573.630.00002
rs498034315SLC28A1intronAG14073.42GG22908.30573.630.00002
rs1215089019SLC7A9synonymousAA22908.30573.63AG14073.420.00002
rs76376823SLC9A10intronAA22908.30573.63AG14073.420.00002
rs42344093SLC9A10intronAA22908.30573.63AC14073.420.00002
rs44341233SLC9A10missenseAA22908.30573.63AG14073.420.00002
rs174462823SLC9A10intronAA22908.30573.63AG14073.420.00002
rs67818443SLC9A10missenseTG14073.42TT22908.30573.630.00002
rs98557553SLC9A10intronAG14073.42GG22908.30573.630.00002
rs1772410420SLC9A8intronAA22908.30573.63AG14073.420.00002

Abbreviations: Chr, chromosome; N, number, g1, genotype 1, n1, number 1; s1, standard deviation 1; g2, genotype 2; n2, number 2; s2, standard deviation 2 *Table only shows several SNPs from a total of 1498 highly significant SNPs.

We selected two SNPs for further analysis from the Cmax group (rs11165069 from ABCA4; rs17847036 from CYP2C9 Table 2), the Tmax group (rs3787555 from CYP24A1; rs2275034 from ABCA4, Table 3), and the AUCinf group (rs11165069 from ABCA4; rs12461006 from SLC1A6, Table 4). ABCA4 (rs11165069, P = 0.000001 in Cmax group; rs2275034, P = 0.000587 in the Tmax group; rs11165069, P = 0.00002 in AUCinf group) showed statistically significant changes by genotype (Fig. 1, 2, and 3 and Table 5). ABCA4 gene polymorphisms affect talniflumate PK parameters. These data show that genetic polymorphism of ABCA4 has a profound effect on the PK of talniflumate.
Figure 1

Results of regression analysis of Cmax group.

Figure 2

Results of regression analysis of Tmax group.

Figure 3

Results of regression analysis of AUCinf group.

Table 5

Summary of regression Analysis

A. Results of Cmax group (ng/ml)B. Results of Tmax group (Hhr)C. Results of AUCinf group (hr·ng/ml)
ABCA4 / rs1165069CYP24A1ABCA4 / rs1165069
CC (n=22)TC (n=1)AA (n=13)AC (n=6)CC (n=4)CC (n=22)TC (n=1)
mean175.4775.532mean4.252.731.8mean908.34073.42
stdev95.28stdev1.230.780.89stdev573.63
CYP2C9 / rs17847036GSTZ1/rs2270422SCL1A6 / rs12461006
AG (n=1)GG (n=22)CC (n=3)TC (n=10)TT (n=10)AG (n=2)GG (n=21)
mean831.52175.4mean5.561.6251.188mean3049.93855.06
stdev95.28stdev1.951.430.85stdev1447.43529.17
In the Cmax group, CYP2C9 rs17847036 showed statistically significant changes according to genotype; the AG genotype exhibited a greater Cmax value (Fig. 1 and Table 5). In the Tmax group, CYP24A1 rs37875551 with an AA genotype showed more than 2-fold increase in Tmax than the CC genotype. ABCA4 rs2275034, with a CC genotype showed a 2-fold increase in Tmax compared to the TT genotype (Fig. 2 and Table 5). In the AUCinf group, ABCA4 rs11165069 with a TC genotype showed a greater than 4-fold increase in AUCinf than the CC genotype. SLC1A6 rs12461006 with an AG genotype showed a 3-fold increase in AUCinf group compared to the GG genotype (Fig. 3 and Table 5).

Discussion

Many factors affect talniflumate blood concentration, such as diet, age, liver function and disease condition. The genes involved in the process of drug absorption, distribution, metabolism and excretion may affect the PK of talniflumate [101314] but the effect of pharmacogenetics factors has yet to be investigated. In this study, we performed whole genome association studies and regression analysis to investigate the genetic factors influencing the PK of talniflumate. Regression analysis of significant SNPs and SNPs of candidate genes revealed several SNPs which significantly affect the PK of talniflumate. Interestingly, although SNPs of ABCA4 have low frequency, their effect was significant, resulting in increases in Cmax, Tmax and AUCinf. Although these results were only obtained via screening studies, they are the first data concerning the influence of genes, including those responsible for metabolizing enzymes and transporters, on the PK of talniflumate. We identified the significant association of SNP rs11165069 (P=0.000001) (Fig. 1A) in intron 24 of the transporter gene ABCA4 with the Cmax and AUCinf of talniflumate. In our study, ABCA4 (rs1165069) with a TC increased the absorption of talniflumate by approximately four times compared to the CC genotype. Therefore, the TC genotype resulted in greater Cmax (0.000001) and AUCinf (P=0.00002) values. However, because of the low frequency of the TC genotype of ABCA4 rs11165069, further analysis is required. Furthermore, subjects in the Tmax group with the minor C allele of the intron 37 SNP rs2275034 (P=0.00058) (Fig. 2B) of ABCA4 showed a more than 2-fold delayed Tmax. From the result, it can be assumed that ABCA4 can affect the absorption of talniflumate and it is possible that the PK parameters can vary according to genotype. Subjects with the minor A allele of the synonymous exon 2 SNP rs17847036 (P=0.000001) of the phase I enzyme gene CYP2C9 showed an increase in Cmax (Fig. 1B). It is well understood that CYP2C9 influences the metabolism of drug types [15] and these results indicate that the genotype of CYP2C9 could influence talniflumate plasma concentration. Other genes, such as CYP24A1 (rs3787555) and SLC1A6 (rs12461006), showed significant associations with the PK of talniflumate, influencing Tmax and AUCinf, respectively. To the best of our knowledge, this is the first whole genome association study regarding the PK of talniflumate. However, the limitations of this study must be acknowledged. As this was a screening study, we performed only univariate analysis between genotypes and PK parameters. Therefore, further confirmative study on the PK of talniflumate with subgroup analysis according to genotypes is required. In conclusion, this study is useful in explaining why the PK of talniflumate may vary depending on the individual. As several additional drugs and enzymes may also influence talniflumate metabolism, we propose that genetic differences are major contributing factors in the PK of this drug.
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