Literature DB >> 32094267

CTRL - a label-free artificial intelligence method for dynamic measurement of single-cell volume.

Kai Yao1,2, Nash D Rochman2,3, Sean X Sun4,2,5.   

Abstract

Measuring the physical size of a cell is valuable in understanding cell growth control. Current single-cell volume measurement methods for mammalian cells are labor intensive, inflexible and can cause cell damage. We introduce CTRL: Cell Topography Reconstruction Learner, a label-free technique incorporating the deep learning algorithm and the fluorescence exclusion method for reconstructing cell topography and estimating mammalian cell volume from differential interference contrast (DIC) microscopy images alone. The method achieves quantitative accuracy, requires minimal sample preparation, and applies to a wide range of biological and experimental conditions. The method can be used to track single-cell volume dynamics over arbitrarily long time periods. For HT1080 fibrosarcoma cells, we observe that the cell size at division is positively correlated with the cell size at birth (sizer), and there is a noticeable reduction in cell size fluctuations at 25% completion of the cell cycle in HT1080 fibrosarcoma cells.
© 2020. Published by The Company of Biologists Ltd.

Entities:  

Keywords:  AI; Artificial intelligence; Cell size; Cell volume; Image translation; ML; Machine learning

Mesh:

Year:  2020        PMID: 32094267      PMCID: PMC7174840          DOI: 10.1242/jcs.245050

Source DB:  PubMed          Journal:  J Cell Sci        ISSN: 0021-9533            Impact factor:   5.285


  32 in total

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2.  Reconstructing specimens using DIC microscope images.

Authors:  F Kagalwala; T Kanade
Journal:  IEEE Trans Syst Man Cybern B Cybern       Date:  2003

3.  3D image stack reconstruction in live cell microscopy of Drosophila muscles and its validation.

Authors:  Tiehua Du; Martin Wasser
Journal:  Cytometry A       Date:  2009-04       Impact factor: 4.355

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5.  The Hippo pathway effector proteins YAP and TAZ have both distinct and overlapping functions in the cell.

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Journal:  J Biol Chem       Date:  2018-05-25       Impact factor: 5.157

6.  Mammalian cell size is controlled by mTOR and its downstream targets S6K1 and 4EBP1/eIF4E.

Authors:  Diane C Fingar; Sofie Salama; Christina Tsou; Ed Harlow; John Blenis
Journal:  Genes Dev       Date:  2002-06-15       Impact factor: 11.361

7.  Optimizing optical flow cytometry for cell volume-based sorting and analysis.

Authors:  Amit Tzur; Jodene K Moore; Paul Jorgensen; Howard M Shapiro; Marc W Kirschner
Journal:  PLoS One       Date:  2011-01-20       Impact factor: 3.240

8.  Cellular size as a means of tracking mTOR activity and cell fate of CD4+ T cells upon antigen recognition.

Authors:  Kristen N Pollizzi; Adam T Waickman; Chirag H Patel; Im Hong Sun; Jonathan D Powell
Journal:  PLoS One       Date:  2015-04-07       Impact factor: 3.240

9.  High-throughput measurement of single-cell growth rates using serial microfluidic mass sensor arrays.

Authors:  Nathan Cermak; Selim Olcum; Francisco Feijó Delgado; Steven C Wasserman; Kristofor R Payer; Mark A Murakami; Scott M Knudsen; Robert J Kimmerling; Mark M Stevens; Yuki Kikuchi; Arzu Sandikci; Masaaki Ogawa; Vincent Agache; François Baléras; David M Weinstock; Scott R Manalis
Journal:  Nat Biotechnol       Date:  2016-09-05       Impact factor: 54.908

10.  YAP and TAZ regulate cell volume.

Authors:  Nicolas A Perez-Gonzalez; Nash D Rochman; Kai Yao; Jiaxiang Tao; Minh-Tam Tran Le; Shannon Flanary; Lucia Sablich; Ben Toler; Eliana Crentsil; Felipe Takaesu; Bram Lambrus; Jessie Huang; Vivian Fu; Pragati Chengappa; Tia M Jones; Andrew J Holland; Steven An; Denis Wirtz; Ryan J Petrie; Kun-Liang Guan; Sean X Sun
Journal:  J Cell Biol       Date:  2019-09-03       Impact factor: 10.539

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  3 in total

Review 1.  The importance of water and hydraulic pressure in cell dynamics.

Authors:  Yizeng Li; Konstantinos Konstantopoulos; Runchen Zhao; Yoichiro Mori; Sean X Sun
Journal:  J Cell Sci       Date:  2020-10-21       Impact factor: 5.285

2.  Single Cell Volume Measurement Utilizing the Fluorescence Exclusion Method (FXm).

Authors:  Nash D Rochman; Kai Yao; Nicolas Perez A Gonzalez; Denis Wirtz; Sean X Sun
Journal:  Bio Protoc       Date:  2020-06-20

3.  Rapid analysis of streaming platelet images by semi-unsupervised learning.

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  3 in total

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