Literature DB >> 32094185

Intrinsically disordered protein RBM14 plays a role in generation of RNA:DNA hybrids at double-strand break sites.

Yumi Jang1, Zeinab Elsayed1, Rebeka Eki2,3, Shuaixin He4, Kang-Ping Du2,3, Tarek Abbas2,3, Mihoko Kai5.   

Abstract

Accumulating evidence suggests participation of RNA-binding proteins with intrinsically disordered domains (IDPs) in the DNA damage response (DDR). These IDPs form liquid compartments at DNA damage sites in a poly(ADP ribose) (PAR)-dependent manner. However, it is greatly unknown how the IDPs are involved in DDR. We have shown previously that one of the IDPs RBM14 is required for the canonical nonhomologous end joining (cNHEJ). Here we show that RBM14 is recruited to DNA damage sites in a PARP- and RNA polymerase II (RNAPII)-dependent manner. Both KU and RBM14 are required for RNAPII-dependent generation of RNA:DNA hybrids at DNA damage sites. In fact, RBM14 binds to RNA:DNA hybrids. Furthermore, RNA:DNA hybrids and RNAPII are detected at gene-coding as well as at intergenic areas when double-strand breaks (DSBs) are induced. We propose that the cNHEJ pathway utilizes damage-induced transcription and intrinsically disordered protein RBM14 for efficient repair of DSBs.

Entities:  

Keywords:  DNA repair; RBM14; double-strand breaks

Year:  2020        PMID: 32094185      PMCID: PMC7071921          DOI: 10.1073/pnas.1913280117

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  53 in total

1.  Identification and characterization of RRM-containing coactivator activator (CoAA) as TRBP-interacting protein, and its splice variant as a coactivator modulator (CoAM).

Authors:  T Iwasaki; W W Chin; L Ko
Journal:  J Biol Chem       Date:  2001-07-06       Impact factor: 5.157

2.  Thyroid hormone receptor-binding protein, an LXXLL motif-containing protein, functions as a general coactivator.

Authors:  L Ko; G R Cardona; W W Chin
Journal:  Proc Natl Acad Sci U S A       Date:  2000-05-23       Impact factor: 11.205

3.  Transient RNA-DNA Hybrids Are Required for Efficient Double-Strand Break Repair.

Authors:  Corina Ohle; Rafael Tesorero; Géza Schermann; Nikolay Dobrev; Irmgard Sinning; Tamás Fischer
Journal:  Cell       Date:  2016-10-27       Impact factor: 41.582

4.  The RNA-binding protein fused in sarcoma (FUS) functions downstream of poly(ADP-ribose) polymerase (PARP) in response to DNA damage.

Authors:  Adam S Mastrocola; Sang Hwa Kim; Anthony T Trinh; Lance A Rodenkirch; Randal S Tibbetts
Journal:  J Biol Chem       Date:  2013-07-05       Impact factor: 5.157

5.  Transcript-RNA-templated DNA recombination and repair.

Authors:  Havva Keskin; Ying Shen; Fei Huang; Mikir Patel; Taehwan Yang; Katie Ashley; Alexander V Mazin; Francesca Storici
Journal:  Nature       Date:  2014-09-03       Impact factor: 49.962

6.  PARP1 Links CHD2-Mediated Chromatin Expansion and H3.3 Deposition to DNA Repair by Non-homologous End-Joining.

Authors:  Martijn S Luijsterburg; Inge de Krijger; Wouter W Wiegant; Rashmi G Shah; Godelieve Smeenk; Anton J L de Groot; Alex Pines; Alfred C O Vertegaal; Jacqueline J L Jacobs; Girish M Shah; Haico van Attikum
Journal:  Mol Cell       Date:  2016-02-18       Impact factor: 17.970

7.  Damage-induced lncRNAs control the DNA damage response through interaction with DDRNAs at individual double-strand breaks.

Authors:  Flavia Michelini; Sethuramasundaram Pitchiaya; Valerio Vitelli; Sheetal Sharma; Ubaldo Gioia; Fabio Pessina; Matteo Cabrini; Yejun Wang; Ilaria Capozzo; Fabio Iannelli; Valentina Matti; Sofia Francia; G V Shivashankar; Nils G Walter; Fabrizio d'Adda di Fagagna
Journal:  Nat Cell Biol       Date:  2017-11-27       Impact factor: 28.824

8.  A small RNA response at DNA ends in Drosophila.

Authors:  Katharina M Michalik; Romy Böttcher; Klaus Förstemann
Journal:  Nucleic Acids Res       Date:  2012-07-30       Impact factor: 16.971

9.  Prion-like domains in RNA binding proteins are essential for building subnuclear paraspeckles.

Authors:  Sven Hennig; Geraldine Kong; Taro Mannen; Agata Sadowska; Simon Kobelke; Amanda Blythe; Gavin J Knott; K Swaminathan Iyer; Diwei Ho; Estella A Newcombe; Kana Hosoki; Naoki Goshima; Tetsuya Kawaguchi; Danny Hatters; Laura Trinkle-Mulcahy; Tetsuro Hirose; Charles S Bond; Archa H Fox
Journal:  J Cell Biol       Date:  2015-08-17       Impact factor: 10.539

10.  S1-DRIP-seq identifies high expression and polyA tracts as major contributors to R-loop formation.

Authors:  Lamia Wahba; Lorenzo Costantino; Frederick J Tan; Anjali Zimmer; Douglas Koshland
Journal:  Genes Dev       Date:  2016-06-01       Impact factor: 11.361

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  11 in total

Review 1.  Walking a tightrope: The complex balancing act of R-loops in genome stability.

Authors:  Joshua R Brickner; Jada L Garzon; Karlene A Cimprich
Journal:  Mol Cell       Date:  2022-05-03       Impact factor: 19.328

Review 2.  R-loops as Janus-faced modulators of DNA repair.

Authors:  Aline Marnef; Gaëlle Legube
Journal:  Nat Cell Biol       Date:  2021-04-09       Impact factor: 28.824

Review 3.  In-Cell Labeling and Mass Spectrometry for Systems-Level Structural Biology.

Authors:  Juan D Chavez; Helisa H Wippel; Xiaoting Tang; Andrew Keller; James E Bruce
Journal:  Chem Rev       Date:  2021-07-07       Impact factor: 72.087

Review 4.  Jack of all trades? The versatility of RNA in DNA double-strand break repair.

Authors:  Ruth F Ketley; Monika Gullerova
Journal:  Essays Biochem       Date:  2020-10-26       Impact factor: 8.000

5.  RBM14 Modulates Tubulin Acetylation and Regulates Spindle Morphology During Meiotic Maturation in Mouse Oocytes.

Authors:  Hao Qin; Yi Qu; Yi-Feng Yuan; Yang-Yang Li; Jie Qiao
Journal:  Front Cell Dev Biol       Date:  2021-02-02

Review 6.  The Role of RNA in DNA Breaks, Repair and Chromosomal Rearrangements.

Authors:  Matvey Mikhailovich Murashko; Ekaterina Mikhailovna Stasevich; Anton Markovich Schwartz; Dmitriy Vladimirovich Kuprash; Aksinya Nicolaevna Uvarova; Denis Eriksonovich Demin
Journal:  Biomolecules       Date:  2021-04-09

7.  Phospho-Ku70 induced by DNA damage interacts with RNA Pol II and promotes the formation of phospho-53BP1 foci to ensure optimal cNHEJ.

Authors:  Amelie Schellenbauer; Marie-Noelle Guilly; Romain Grall; Romain Le Bars; Vincent Paget; Thierry Kortulewski; Haser Sutcu; Cécile Mathé; Marie Hullo; Denis Biard; François Leteurtre; Vilma Barroca; Youenn Corre; Lamya Irbah; Emilie Rass; Benoit Theze; Pascale Bertrand; Jeroen A A Demmers; Josée Guirouilh-Barbat; Bernard S Lopez; Sylvie Chevillard; Jozo Delic
Journal:  Nucleic Acids Res       Date:  2021-11-18       Impact factor: 16.971

8.  RBM6 splicing factor promotes homologous recombination repair of double-strand breaks and modulates sensitivity to chemotherapeutic drugs.

Authors:  Feras E Machour; Enas R Abu-Zhayia; Samah W Awwad; Tirza Bidany-Mizrahi; Stefan Meinke; Laila A Bishara; Florian Heyd; Rami I Aqeilan; Nabieh Ayoub
Journal:  Nucleic Acids Res       Date:  2021-11-18       Impact factor: 16.971

9.  LncRNA RP5-998N21.4 promotes immune defense through upregulation of IFIT2 and IFIT3 in schizophrenia.

Authors:  Bo Guo; Tingyun Jiang; Fengchun Wu; Hongyu Ni; Junping Ye; Xiaohui Wu; Chaoying Ni; Meijun Jiang; Linyan Ye; Zhongwei Li; Xianzhen Zheng; Shufen Li; Qiong Yang; Zhongju Wang; Xingbing Huang; Cunyou Zhao
Journal:  Schizophrenia (Heidelb)       Date:  2022-03-01

Review 10.  Fused in Sarcoma (FUS) in DNA Repair: Tango with Poly(ADP-ribose) Polymerase 1 and Compartmentalisation of Damaged DNA.

Authors:  Maria V Sukhanova; Anastasia S Singatulina; David Pastré; Olga I Lavrik
Journal:  Int J Mol Sci       Date:  2020-09-24       Impact factor: 5.923

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