| Literature DB >> 32087334 |
Jin-Yan Li1, Zhi You2, Qiong Wang3, Zhi-Jian Zhou4, Ye Qiu5, Rui Luo6, Xing-Yi Ge7.
Abstract
At the end of December 2019, a novel coronavirus, 2019-nCoV, caused an outbreak of pneumonia spreading from Wuhan, Hubei province, to the whole country of China, which has posed great threats to public health and attracted enormous attention around the world. To date, there are no clinically approved vaccines or antiviral drugs available for these human coronavirus infections. Intensive research on the novel emerging human infectious coronaviruses is urgently needed to elucidate their route of transmission and pathogenic mechanisms, and to identify potential drug targets, which would promote the development of effective preventive and therapeutic countermeasures. Herein, we describe the epidemic and etiological characteristics of 2019-nCoV, discuss its essential biological features, including tropism and receptor usage, summarize approaches for disease prevention and treatment, and speculate on the transmission route of 2019-nCoV.Entities:
Keywords: 2019-nCoV; ACE2; Bat; Pneumonia; SARS-CoV; Spike
Mesh:
Substances:
Year: 2020 PMID: 32087334 PMCID: PMC7079563 DOI: 10.1016/j.micinf.2020.02.002
Source DB: PubMed Journal: Microbes Infect ISSN: 1286-4579 Impact factor: 2.700
Key events of 2019-nCoV.
| Date | Key events |
|---|---|
| 31 December 2019 | The Health Commission of Hubei province, China, first announced a cluster of unexplained cases of pneumonia. |
| 3 January 2020 | A total of 44 patients (11 are severely ill, while the remaining 33 patients are in stable condition.) with pneumonia of unknown etiology have been reported to WHO by the national authorities in China. |
| 5 January 2020 | The WHO published a document detailing 44 patients had “pneumonia of unknown etiology”, with 121 close contacts under surveillance. |
| 8 January 2020 | The genetic sequencing demonstrated that the novel coronavirus is the potential causative organism. |
| 11 January 2020 | 41 patients have been diagnosed to have infection of the novel coronavirus, with 763 close contacts, 7 severe cases and the first death. |
| 12 January 2020 | The virus was tentatively named by WHO as the 2019 novel coronavirus (2019-nCoV). |
| 13 January 2020 | The first imported case of 2019-nCoV was found in Thailand. This is the first infected person diagnosed outside China. The patient is a 61-year-old Chinese woman living in Wuhan City, Hubei Province, China. |
| 16 January 2020 | The first case reported in Japan. This is the second confirmed case of 2019-nCoV that has been detected outside of China. The person travelled to Wuhan, China. |
| 19 January 2020 | The first case reported in Korea. The patient was a Chinese woman who flew from Wuhan to Incheon International Airport. Four other suspected patients were being examined. Furthermore, the first case reported in Shenzhen, China. |
| 20 January 2020 | Two local infections in the Chinese province of Guangdong with no direct visit to Wuhan were the first confirmed the occurrence of human-to-human transmission through epidemiological investigation. And the first case reported in Shanghai, China. |
| 21 January 2020 | 15 health-care workers infected with the 2019-nCoV in Wuhan. Zhejiang Province, Henan Province, Sichuan Province and Taiwa confirmed the first case of 2019-nCoV, respectively. The WHO announced that there was possible sustained human to-human transmission. |
| 22–23 January 2020 | 17 death in Hubei Province. America and Macao and Many provinces confirmed the first case of 2019-nCoV. Such as Shandong Province, Yunnan Province, Hunan Province, America, Macao, Anhui Province, Fujian Province, Guizhou Province, Shanxi Province, Ningxia Autonomous Region and Hebei Province reported the first case of 2019-nCoV, respectively. |
| 23 January 2020 | the local government in Wuhan announced the suspension of public transportation, with closure of airports, railway stations, and highways |
| 24 January 2020 | Zhejiang and Shanghai’s first patients diagnosed with 2019-nCoV recover. |
| 5 February 2020 | The confirmed pneumonia cases are increasing in 34 provinces, municipalities, and special administrative regions in China. 24,377 cases of 2019-nCoV confirmed in China, including 492 deaths, 3219 serious, and 901 cured. 175 cases of infection were confirmed in 24 other cities around the world. |
Fig. 1The evolutionary position of 2019-nCoV. The phylogenetic tree was constructed based on the complete genomic sequences of 2019-nCoV and related CoVs by using the neighbor-joining (NJ) method with 1000 bootstrap. The novel 2019-nCoV detected strains were indicated in bold with solid squares. Abbreviations are as follows: SARSr coronavirus, SARS-related coronavirus. The accession numbers of CoVs were showed in the figure. Bootstrap values above 50 were shown.
The amino acid sequence identities of ACE2 among different species.
| Species | Pairwise identities (%) of the amino acid sequences of ACE2 | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| African green monkey | Civet | Bat ( | Swine | Malayan pangolin | Mouse | Cat | Camel | Goat | Tiger Snake | Parus major | Gallus gallus | ||||||
| Human | 93.93 | 83.48 | 80.75 | 81.37 | 84.84 | 82.11 | 85.22 | 83.23 | 81.61 | 81.24 | 79.01 | 77.29 | 71.17 | 70.51 | 59.73 | 67.08 | 65.31 |
| African green monkey | 81.78 | 79.93 | 79.93 | 83.77 | 81.78 | 83.15 | 81.91 | 81.41 | 80.92 | 77.94 | 76.85 | 70.38 | 69.84 | 59.21 | 65.6 | 64.13 | |
| Civet | 81.78 | 81.49 | 82.73 | 85.59 | 81.61 | 93.29 | 83.85 | 81.86 | 81.74 | 79.75 | 75.55 | 71.66 | 71.63 | 59.6 | 67.44 | 66.3 | |
| Bat ( | 79.93 | 81.49 | 80 | 82.86 | 78.26 | 83.73 | 81.37 | 80.37 | 80 | 78.51 | 74.56 | 69.68 | 70.02 | 58.61 | 65.11 | 65.19 | |
| Swine | 79.93 | 82.73 | 80 | 82.61 | 80.62 | 83.98 | 89.81 | 87.7 | 87.58 | 77.64 | 75.3 | 71.17 | 71.01 | 61.09 | 66.95 | 65.56 | |
| Malayan pangolin | 83.77 | 85.59 | 82.86 | 82.61 | 82.73 | 87.33 | 84.72 | 82.11 | 81.86 | 80.87 | 77.17 | 71.66 | 70.89 | 59.6 | 67.44 | 65.07 | |
| Mouse | 81.78 | 81.61 | 78.26 | 80.62 | 82.73 | 81.74 | 80.99 | 80.12 | 80.37 | 78.63 | 78.16 | 71.05 | 71.13 | 61.21 | 67.2 | 66.17 | |
| Cat | 83.15 | 93.29 | 83.73 | 83.98 | 87.33 | 81.74 | 85.71 | 83.23 | 83.11 | 81.49 | 76.42 | 72.65 | 72.25 | 59.6 | 67.81 | 66.79 | |
| Camel | 81.91 | 83.85 | 81.37 | 89.81 | 84.72 | 80.99 | 85.71 | 88.2 | 88.57 | 79.25 | 77.29 | 71.79 | 72.12 | 61.34 | 67.2 | 66.42 | |
| Goat | 81.41 | 81.86 | 80.37 | 87.7 | 82.11 | 80.12 | 83.23 | 88.2 | 97.76 | 78.14 | 76.54 | 72.04 | 71.38 | 60.84 | 66.09 | 65.44 | |
| 80.92 | 81.74 | 80 | 87.58 | 81.86 | 80.37 | 83.11 | 88.57 | 97.76 | 78.39 | 77.04 | 71.42 | 71.01 | 61.09 | 66.09 | 65.31 | ||
| 77.94 | 79.75 | 78.51 | 77.64 | 80.87 | 78.63 | 81.49 | 79.25 | 78.14 | 78.39 | 74.56 | 70.67 | 69.65 | 60.59 | 68.8 | 66.42 | ||
| 76.85 | 75.55 | 74.56 | 75.3 | 77.17 | 78.16 | 76.42 | 77.29 | 76.54 | 77.04 | 74.56 | 66.61 | 66.82 | 59.38 | 63.9 | 63.12 | ||
| 70.38 | 71.66 | 69.68 | 71.17 | 71.66 | 71.05 | 72.65 | 71.79 | 72.04 | 71.42 | 70.67 | 66.61 | 81.92 | 60.7 | 67.08 | 64.83 | ||
| 69.84 | 71.63 | 70.02 | 71.01 | 70.89 | 71.13 | 72.25 | 72.12 | 71.38 | 71.01 | 69.65 | 66.82 | 81.92 | 60.9 | 64.62 | 63.84 | ||
| Tiger Snake | 59.21 | 59.6 | 58.61 | 61.09 | 59.6 | 61.21 | 59.6 | 61.34 | 60.84 | 61.09 | 60.59 | 59.38 | 60.7 | 60.9 | 64.5 | 63.71 | |
| Parus major | 65.6 | 67.44 | 65.11 | 66.95 | 67.44 | 67.2 | 67.81 | 67.2 | 66.09 | 66.09 | 68.8 | 63.9 | 67.08 | 64.62 | 64.5 | 82.2 | |
| Gallus gallus | 64.13 | 66.3 | 65.19 | 65.56 | 65.07 | 66.17 | 66.79 | 66.42 | 65.44 | 65.31 | 66.42 | 63.12 | 64.83 | 63.84 | 63.71 | 82.2 | |
Accession numbers: human (NP_068576.1), monkey (AY996037.1), civet (AAX63775.1), bat (R.sinicus) (AGZ48803.1), swine (NP_001116542.1), Malayan pangolin (XP_017505752.1), mouse (NP_001123985.1), cat (NP_001034545.1), camel (XP_010991717.1), goat (NP_001277036.1), Bos mutus (XP_005903173.1), Erinaceus europaeus (XP_007538670.1), Phascolarctos cinereus (XP_020863153.1), Sarcophilus harrisii (XP_031814825.1), tiger Snake (XP_026530754.1), Parus major (XP_015486815.1), Gallus gallus (QEQ50331.1).
Fig. 2Phylogenetic analysis of ACE2 from humans and 18 other animals. The tree was constructed based on the complete amino acid sequences of ACE2s derived from humans and other animals by using the neighbor-joining (NJ) method with 1000 bootstrap. The accession numbers were as the same as Table 2. Bootstrap values above 50 were shown.