| Literature DB >> 32067109 |
Stephanie Hodeib1, Jethro A Herberg1, Michael Levin1, Vanessa Sancho-Shimizu2,3.
Abstract
Neisseria meningitidis is a leading cause of bacterial septicaemia and meningitis worldwide. Meningococcal disease is rare but can be life threatening with a tendency to affect children. Many studies have investigated the role of human genetics in predisposition to N. meningitidis infection. These have identified both rare single-gene mutations as well as more common polymorphisms associated with meningococcal disease susceptibility and severity. These findings provide clues to the pathogenesis of N. meningitidis, the basis of host susceptibility to infection and to the aetiology of severe disease. From the multiple discoveries of monogenic complement deficiencies to the associations of complement factor H and complement factor H-related three polymorphisms to meningococcal disease, the complement pathway is highlighted as being central to the genetic control of meningococcal disease. This review aims to summarise the current understanding of the host genetic basis of meningococcal disease with respect to the different stages of meningococcal infection.Entities:
Mesh:
Substances:
Year: 2020 PMID: 32067109 PMCID: PMC7272491 DOI: 10.1007/s00439-020-02128-4
Source DB: PubMed Journal: Hum Genet ISSN: 0340-6717 Impact factor: 4.132
Fig. 1Monogenic disorders underlying Neisseria meningitidis infection. Nm is transmitted via droplets and selectively colonises the human nasopharynx. In susceptible hosts, meningococci can invade and cross the nasopharyngeal mucosal epithelium to gain access to the blood stream. Once inside the bloodstream the meningococci grow in number and are disseminated throughout the host. Uncontrolled growth in the blood, leads to high titres of Nm and septicaemia. In other patients, there is less Nm replication in the blood, but meningococci breach the blood brain barrier (BBB), multiply uncontrollably in the cerebrospinal fluid and infect the meninges, leading to meningitis. The genes highlighted in red are monogenic disorders almost exclusively associated with IMD. Highlighted in orange, are monogenic disorders associated with bacterial infections and, though not exclusive to Nm infection, has been observed in cases of IMD. SPLUNC1, highlighted in yellow, has recently been demonstrated as a monogenic disorder associated with IMD though its pathogen exclusivity is unknown. Image created with biorender.com
Polymorphisms associated with meningococcal disease
| Gene | Variant | Genetic model | Significance | Study type | Gene-specific phenotype | Infection phenotype | Disease outcome | References |
|---|---|---|---|---|---|---|---|---|
| Haplotype Cd | Additive | Candidate gene | N/A | IMD | Protective | Callaghan et al. ( | ||
| Haplotype Bd | Additive | Candidate gene | N/A | IMD | Protective | Callaghan et al. ( | ||
| Haplotype Cd | Additive | Candidate gene | N/A | IMD | Susceptibility | Callaghan et al. ( | ||
| rs1059046 (REF); rs17886395 (REF);rs1965707; rs1965708 | Recessive | Candidate gene | N/A | IMD | Susceptibility | Jack et al. ( | ||
| rs1059046 (REF); rs17886395; rs1965707; rs1965708 (REF) | Dominant | Candidate gene | N/A | IMD | Protective | Jack et al. ( | ||
| rs1965708 | Recessive | Candidate gene | N/A | IMD | Susceptibility | Jack et al. ( | ||
| rs1965708 | Recessive | OR = 2.9 (95% CI 1.1–7.7) | Candidate gene | N/A | Death | Susceptibility | Jack et al. ( | |
| rs426736 | Additive | GWAS | N/A | IMD | Susceptibility | Davila et al. ( | ||
| c.-496C > T (REF) | Recessive | Candidate gene | High fH levels and reduced bactericidal activity | IMD | Susceptibility | Haralambous et al. ( | ||
| rs1065489 | Additive | GWAS | N/A | IMD | Susceptibility | Davila et al. ( | ||
| rs1061170 | Dominant | Candidate gene | N/A | IMD | Susceptibility | Bradley et al. ( | ||
| rs3753396 | Dominant | Candidate gene | N/A | IMD | Protective | Bradley et al. ( | ||
| rs5030737; rs1800450; rs1800451 | Dominant | Candidate gene | N/A | IMD | Susceptibility | Faber et al. ( | ||
| rs5030737; rs1800450; rs1800451 | Dominant | Candidate gene (hospital cohort) | N/A | IMD | Susceptibility | Hibberd et al. ( | ||
| rs5030737; rs1800450; rs1800451 | Dominant | Candidate gene (community-based study) | N/A | IMD | Susceptibility | Hibberd et al. ( | ||
| rs4986790 | Dominant | Candidate gene | N/A | Death | Susceptibility | Faber et al. ( | ||
| rs4986790 | Dominant | Candidate gene | N/A | IMD | Susceptibility | Faber et al. ( | ||
| rs352140 | Dominant | Candidate gene | N/A | MM | Protective | Sanders et al. ( | ||
| rs1800629 | Dominant | Candidate gene | High TNF-α | Death | Susceptibility | Nadel et al. ( | ||
| rs1800629 | Dominant | Candidate gene | High TNF-α | IMD | Susceptibility | Nadel et al. ( | ||
| rs1800629 (REF) | Dominant | OR = 3.619 (95% CI 1.758–7.449) | Candidate gene | N/A | IMD | Susceptibility | Titmarsh et al. ( | |
| rs1800629 (REF) | Recessive | OR = 3.791 (95% CI 1.720–8.357) | Candidate gene | N/A | IMD | Susceptibility | Titmarsh et al. ( | |
| rs1800629 | Recessive | OR = 1.93 (95% CI 1.08–3.46) | Candidate gene | High TNF-α | IMD | Susceptibility | Read et al. ( | |
| rs16944 (REF) | Recessive | Candidate gene | N/A | Death | Increased severity | Read et al. ( | ||
| rs16944 | Recessive | Candidate gene | N/A | Death | Increased severity | Read et al. ( | ||
| rs16944 (REF) | Dominant | (95% CI 1.10–3.79) | Candidate gene | N/A | Death | Protective | Read et al. ( | |
| rs16944/rs419598 (REF) | Dominant/Recessive | Candidate gene | N/A | Death | Protective | Read et al. ( | ||
| rs16944/rs419598 | Dominant/Dominant | OR = 0.61 (95% CI 0.38–0.993) | Candidate gene | N/A | Death | Susceptibility | Read et al. ( | |
| 86-basepair VNTR | Recessive | Candidate gene | N/A | IMD | Susceptibility | Balding et al. ( | ||
| rs419598 | Recessive | OR = 2.0 (95% CI 1.1–3.4) | Candidate gene | N/A | IMD | Susceptibility | Endler et al. ( | |
| rs1800795 (REF) | Recessive | OR = 2.64 (95% CI 1.12–6.22) | Candidate gene | N/A | Death | Susceptibility | Balding et al. ( | |
| rs1800795 (REF) | Recessive | OR = 4.395 (95% CI 1.900–10.162) | Candidate gene | N/A | IMD | Susceptibility | Titmarsh et al. ( | |
| rs1800896 | Recessive | Candidate gene | N/A | IMD | Susceptibility | Balding et al. ( | ||
| rs1801274 | Recessive | Candidate gene | Reduced phagocytosis | MS | Susceptibility | Bredius et al. ( | ||
| rs1801274 | Recessive | Candidate gene | N/A | IMD | Susceptibility | Platonov et al. ( | ||
| rs1801274 (REF) | Recessive | Candidate gene | N/A | IMD | Protective | Platonov et al. ( | ||
| rs1801274 | Dominant | Candidate gene | N/A | IMD | Susceptibility | Platonov et al. ( | ||
| rs1801274 | Recessive | Candidate gene | N/A | IMD | Susceptibility | Domingo et al. ( | ||
| rs1801274 | Recessive | Candidate gene | N/A | IMD | Susceptibility | Domingo et al. ( | ||
| rs1801274 | Recessive | Candidate gene | N/A | IMD | Susceptibility | Domingo et al. ( | ||
| rs1801274/NA2 allotype | Recessive | Candidate gene | Reduced phagocytosis | IMD | Susceptibility | Fijen et al. ( | ||
| rs6025 | Dominant | Candidate gene | Increased thrombosis | Purpura | Increased severity | Kondaveeti et al. ( | ||
| fulminans | ||||||||
| rs6025 | Recessive | Single case study | Candidate gene | Increased thrombosis | Purpura | Increased severity | Sackesen et al. ( | |
| fulminans | ||||||||
| rs1799889 | Recessive | RR = 2.0 (95% CI 1.0–3.8) | Candidate gene | Higher PAI-1 concentration | Death | Increased severitya | Hermans et al. ( | |
| rs1799889 | Recessive | Candidate gene | N/A | Death | Increased severitya | Haralambous et al. ( | ||
| rs1799889 | Recessive | Candidate gene | N/A | MS | Increased severitya | Haralambous et al. ( | ||
| rs1799889 | Recessive | Candidate gene | N/A | Vascular complications | Increased severitya | Haralambous et al. ( | ||
| rs1799889 | Recessive | OR = 5.9 (95% CI 1.9–18.0) | Candidate gene | N/A | MS | Increased severitya | Westendorp et al. ( | |
| rs1799889 | Recessive | Candidate gene | N/A | MM | Increased severityb | Westendorp et al. ( | ||
| rs1799889 | Recessive | Candidate gene | N/A | Death | Increased severitya | Geishofer et al. ( | ||
| rs1799889 | Recessive | Candidate gene | N/A | MS | Increased severitya | Geishofer et al. ( | ||
| rs1799889 | Recessive | Candidate gene | N/A | Disseminated intravascular coagulation | Increased severitya | Binder et al. ( | ||
| rs1799808 (REF), rs1799809 | Recessive | Candidate gene | Low protein C levels c | IMD | Susceptibility | Binder et al. ( | ||
| rs1799808, rs1799809 | Dominant | Candidate gene | N/A | MS | Increased severity | Binder et al. ( | ||
| rs1799808, rs1799809 (REF) | Recessive | Candidate gene | N/A | MS | Protective | Binder et al. ( | ||
| rs779491029 | Recessive | Candidate gene | N/A | Death | Increased severity | Kremer Hovinga et al. ( | ||
| rs779491029 | Recessive | OR = 13.7 (95% CI 1.5–123) | Candidate gene | Increased anti-fibrinolytic activity | MS | Increased severity | Emonts et al. ( | |
All alleles refer to alternative alleles unless denoted (REF)for referent allele
IMD meningococcal disease, MS meningococcal septicaemia, MM meningococcal meningitis, OR odds ratio, RR risk ratio, HR hazard ratio.
a4G/4G genotype
b5G/5G genotype
cFunction of variant reported (Brandtzaeg et al. 1989)
dRefer to reference for individual SNPs
Monogenic disorders associated with meningococcal disease
| Gene | Variant | Inheritance | Study type | Gene-specific phenotype | Infection phenotype | Disease outcome | References |
|---|---|---|---|---|---|---|---|
| c.65G > A, p.G22E | AD | Familial | Increased bacterial adhesion | IMD | Susceptibility | Mashbat et al. ( | |
| c.481C > T, p.R161X | XR | Familial | Reduced complement function | IMD | Susceptibility | Westberg et al. ( | |
| c.1240T > G, p.Y414D | XR | Familial | Reduced complement function | IMD | Susceptibility | Fredrikson et al. ( | |
| c.617C > G, p.S206X | XR | Familial | Reduced complement function | IMD | Susceptibility | van den Bogaard et al. ( | |
| c.893G > T p.G298V | XR | Familial | Reduced complement function | IMD | Susceptibility | van den Bogaard et al. ( | |
| c.1164G > A, p.W388X | XR | Familial | Reduced complement function | IMD | Susceptibility | Helminen et al. ( | |
| c.1055A > G, p.Y352C | AR | Familial | Reduced complement function | IMD | Susceptibility | Marujo et al. ( | |
| c.754G > A, p.A252T | AR | Familial | Reduced complement function | IMD | Susceptibility | Owen et al. ( | |
| c.55C > T, p.Q19X; c.4444C > T, p.R1482Xa | AR | Familial | Reduced complement function | IMD | Susceptibility | Wang et al. ( | |
| c.1115A > G, p.K372R | AR | Familial | Reduced complement function | IMD | Susceptibility | Pfarr et al. ( | |
| c.4890-4891delinsG, p.L1631fs | AR | Familial | Reduced complement function | IMD | Susceptibility | Delgado-Cervino et al. ( | |
| c.878delA | AR | Familial | Reduced complement function | IMD | Susceptibility | Parham et al. ( | |
c.1599T > A, p.Y493X IVS3 + 3A > C | AR | Familial | Reduced complement function | IMD | Susceptibility | Parham et al. ( | |
| c.1936delG | AR | Familial | Reduced complement function | IMD | Susceptibility | Nishizaka et al. ( | |
| c.879delG | AR | Familial | Reduced complement function | IMD | Susceptibility | Hobart et al. ( | |
| c.1195delC | AR | Familial | Reduced complement function | IMD | Susceptibility | Zhu et al. ( | |
| c.2107C > T, p.Q681X | AR | Familial | Reduced complement function | IMD | Susceptibility | Barroso et al. ( | |
| c.2184T > A, p.C728X | AR | Familial | Reduced complement function | IMD | Susceptibility | Nishizaka et al. ( | |
c.281-1G > T c.1-?-2350 + ?del | AR | Familial | Reduced complement function | IMD | Susceptibility | Ki et al. ( | |
| c.1135G > C, p. G379R | AR | Familial | Reduced complement function | IMD | Susceptibility | Fernie et al. ( | |
| c.1922delAG | AR | Familial | Reduced complement function | IMD | Susceptibility | Barroso et al. ( | |
c.633_643del c.1922delAGa | AR | Familial | Reduced complement function | IMD | Susceptibility | Barroso et al. ( | |
| c.1282C > T, p.R428X | AR | Familial | Reduced complement function | IMD | Susceptibility | Dellepiane et al. ( | |
c.271C > T, p.Q91X; c.820C > T, p.R274X | AR | Familial | Reduced complement function | IMD | Susceptibility | Saucedo et al. ( | |
c.1041_1047dup, p.L350fs c.271C > T, p.Q91Xa | AR | Familial | Reduced complement function | IMD | Susceptibility | Arnold et al. ( | |
| c.346C > T, p.R116X | AR | Cohort | Reduced complement function | MM | Susceptibility | Kira et al. ( | |
| c.162C > A, p.C54X | AR | Familial | Reduced complement function | IMD | Susceptibility | Zoppi et al. ( | |
| c.638T > G, p.V213G; c.640T > C, p.C214R | AR | Familial | Reduced complement function | MS | Susceptibility | Sprong et al. ( | |
| c.125C > A, p.S42X | AR | Familial | Reduced complement function | IMD | Susceptibility | Biesma et al. ( | |
| c.620G > C, p.R176P | AR | Familial | Reduced complement function | IMD | Susceptibility | Sng et al. ( | |
c. .677–678delinsTTCT c.653T > C, p.L218Pa | AR | Familial | Reduced complement function | IMD | Susceptibility | El Sissy et al. ( | |
c.766C > T, p.Q256X c.1894-1897delTTTG, p.F632C | AR | Familial | Reduced complement function | MM | Susceptibility | Slade et al. ( | |
| c.1282A > T p.H400L | AR | Familial | Reduced complement function | IMD | Susceptibility | Vyse et al. ( | |
c.1282A > T p.H400L c.801G > A p.del-exon 5a | AR | Familial | Reduced complement function | IMD | Susceptibility | Vyse et al. ( | |
c.266_?_536 + ?del c.1420C > T, p.R474X | AR | Familial | Reduced complement function | IMD | Susceptibility | Alba-Dominguez et al. ( | |
c.485G > A, p.G162D c.1176_1177dupAT, p.W393Yfs*5 | AR | Familial | Reduced complement function | IMD | Susceptibility | Alba-Dominguez et al. ( | |
| c.772G > A, p.A258T | AR | Familial | Reduced complement function | IMD | Susceptibility | Alba-Dominguez et al. ( | |
| c.1716G > A, p.K552X | AR | Familial | Reduced complement function | IMD | Susceptibility | Da Silva Reis et al. ( | |
| c.841_868del, p.Val281fs | AR | Cohort | Reduced complement function | IMD | Susceptibility | Jonsson et al. ( | |
| c.877C > T, p.Q293X | AR | Case study | Impaired IL-6 production | IMD | Susceptibility | Frans et al. ( | |
| c.1249T > C, p.C417R | XR | Case study | N/A | IMD | Susceptibility | Huppmann et al. ( | |
| c.988C > T, p.R330X | N/A | Cohort | N/A | IMD | N/A | Spinner et al. ( | |
IMD invasive meningococcal disease, MS meningococcal septicaemia, MM meningococcal meningitis, AD autosomal dominant, XR X-linked recessive, AR autosomal recessive
aCompound heterozygous mutations
Fig. 2Complement pathway. Overview of three main complement pathways that involves multiple cleavage events that converge to a cleavage of central component C3–C3b, which triggers a cascade that leads to the formation of the membrane-attack complex capable of cell lysis via pore formation. C3b is also an opsonin capable of tagging pathogens for phagocytosis and C3b formation can act as a positive feedback loop for the alternative pathway, necessitating the need for several negative regulators including CFI, and CFH. Properdin is a positive regulator of the alternative pathway, stabilising the C3 convertase. Those in red symbolises factors that have reported loss of function mutations that are associated with either chronic meningococcaemia or IMD. Image created with biorender.com