Literature DB >> 15778377

Linking C5 deficiency to an exonic splicing enhancer mutation.

Nicole Pfarr1, Dirk Prawitt, Michael Kirschfink, Claudia Schroff, Markus Knuf, Pirmin Habermehl, Wilma Mannhardt, Fred Zepp, William G Fairbrother, William Fairbrother, Michael Loos, Christopher B Burge, Joachim Pohlenz.   

Abstract

As an important component of the innate immune system, complement provides the initial response to prevent infections by pathogenic microorganisms. Patients with dysfunction of C5 display a propensity for severe recurrent infections. In this study, we present a patient with C5 deficiency demonstrated by immunochemical and functional analyses. Direct sequencing of all C5 exons displayed no mutation of obvious functional significance, except for an A to G transition in exon 10 predicting an exchange from lysine to arginine. This sequence alteration was present in only one allele of family members with a reduced serum C5 concentration and in both alleles of the patient with almost complete C5 deficiency, suggesting that this alteration may be producing the phenotype. Recent findings indicate that distinct nucleotide sequences, termed exonic splicing enhancers (ESEs), influence the splicing process. cDNA from all family members harboring the mutated allele showed skipping of exon 10, which resulted in a premature STOP codon, explaining the lack of C5 in the propositus. Sequence analysis of the mutated region revealed the substitution to be located within an ESE, as predicted by the RESCUE-ESE program. The altered ESE sequence is located close to the 5' splicing site and also lowers the predicted strength of the splice site itself. This apparently inconsequential sequence alteration represents a noncanonical splicing mutation altering an ESE. Our finding sheds a new light on the role of putative silent/conservative mutations in disease-associated genes.

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Year:  2005        PMID: 15778377     DOI: 10.4049/jimmunol.174.7.4172

Source DB:  PubMed          Journal:  J Immunol        ISSN: 0022-1767            Impact factor:   5.422


  18 in total

1.  Synonymous SNPs provide evidence for selective constraint on human exonic splicing enhancers.

Authors:  David B Carlini; Jordan E Genut
Journal:  J Mol Evol       Date:  2005-11-30       Impact factor: 2.395

2.  Sex-dependent association of a common low-density lipoprotein receptor polymorphism with RNA splicing efficiency in the brain and Alzheimer's disease.

Authors:  Fanggeng Zou; Rangaraj K Gopalraj; Johann Lok; Haiyan Zhu; I-Fang Ling; James F Simpson; H Michael Tucker; Jeremiah F Kelly; Samuel G Younkin; Dennis W Dickson; Ronald C Petersen; Neill R Graff-Radford; David A Bennett; Julia E Crook; Steven G Younkin; Steven Estus
Journal:  Hum Mol Genet       Date:  2007-12-08       Impact factor: 6.150

3.  Shifting paradigm of association studies: value of rare single-nucleotide polymorphisms.

Authors:  Ivan P Gorlov; Olga Y Gorlova; Shamil R Sunyaev; Margaret R Spitz; Christopher I Amos
Journal:  Am J Hum Genet       Date:  2008-01       Impact factor: 11.025

4.  Seemingly neutral polymorphic variants may confer immunity to splicing-inactivating mutations: a synonymous SNP in exon 5 of MCAD protects from deleterious mutations in a flanking exonic splicing enhancer.

Authors:  Karsten Bork Nielsen; Suzette Sørensen; Luca Cartegni; Thomas Juhl Corydon; Thomas Koed Doktor; Lisbeth Dahl Schroeder; Line Sinnathamby Reinert; Orly Elpeleg; Adrian R Krainer; Niels Gregersen; Jørgen Kjems; Brage Storstein Andresen
Journal:  Am J Hum Genet       Date:  2007-01-18       Impact factor: 11.025

Review 5.  Splicing regulation: from a parts list of regulatory elements to an integrated splicing code.

Authors:  Zefeng Wang; Christopher B Burge
Journal:  RNA       Date:  2008-03-27       Impact factor: 4.942

6.  Common silent mutations in all types of hereditary complement C1q deficiencies.

Authors:  Franz Petry; Michael Loos
Journal:  Immunogenetics       Date:  2005-09-29       Impact factor: 2.846

7.  Complement factor 5 (C5) p.A252T mutation is prevalent in, but not restricted to, sub-Saharan Africa: implications for the susceptibility to meningococcal disease.

Authors:  C Franco-Jarava; D Comas; A Orren; M Hernández-González; R Colobran
Journal:  Clin Exp Immunol       Date:  2017-04-20       Impact factor: 4.330

8.  Impact of human pathogenic micro-insertions and micro-deletions on post-transcriptional regulation.

Authors:  Xinjun Zhang; Hai Lin; Huiying Zhao; Yangyang Hao; Matthew Mort; David N Cooper; Yaoqi Zhou; Yunlong Liu
Journal:  Hum Mol Genet       Date:  2014-01-16       Impact factor: 6.150

Review 9.  C5 complement deficiency in a Saudi family, molecular characterization of mutation and literature review.

Authors:  Rand Arnaout; Sahar Al Shorbaghi; Hasan Al Dhekri; Hamoud Al-Mousa; Abdulaziz Al Ghonaium; Bandar Al Saud; Saleh Al Muhsen; Lina Al Baik; Abbas Hawwari
Journal:  J Clin Immunol       Date:  2013-02-01       Impact factor: 8.317

Review 10.  Mutation analysis in primary immunodeficiency diseases: case studies.

Authors:  Amy P Hsu; Thomas A Fleisher; Julie E Niemela
Journal:  Curr Opin Allergy Clin Immunol       Date:  2009-12
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