| Literature DB >> 32060969 |
Rui Cao1, Weifeng Tang2, Shuchen Chen1.
Abstract
BACKGROUND: Growing evidence suggested that B- and T-lymphocyte attenuator (BTLA) polymorphisms raised the susceptibility to a wide range of cancers. This study aimed to evaluate whether BTLA variants were related to the risk of esophageal squamous cell carcinoma (ESCC).Entities:
Keywords: zzm321990BTLAzzm321990; ESCC; polymorphisms; susceptibility
Mesh:
Substances:
Year: 2020 PMID: 32060969 PMCID: PMC7307356 DOI: 10.1002/jcla.23221
Source DB: PubMed Journal: J Clin Lab Anal ISSN: 0887-8013 Impact factor: 2.352
Primary information for BTLA tagging SNPs
| Genotyped polymorphisms | rs2171513 G > A | rs3112270 A > G | rs1982809 G > A | rs16859629 T > C |
|---|---|---|---|---|
| Chr | 3 | 3 | 3 | 3 |
| Position_38 | 112466080 | 112461797 | 112463893 | 112471533 |
| Region | 3'UTR | Promoter | 3'UTR | intron_variant |
| MAF in database (1000 genomes‐ Chinese Han populations) | 0.188 | 0.269 | 0.216 | 0.067 |
| MAF in our controls (n = 1208) | 0.197 | 0.281 | 0.260 | 0.081 |
|
| .551 | .026 | .108 | .958 |
| % Genotyping value | 99.27% | 99.12% | 99.22% | 99.29% |
Abbreviations: HWE, Hardy‐Weinberg equilibrium; MAF, minor allele frequency.
Distribution of selected demographic variables and risk factors in ESCC cases and controls
| Variable | Cases (n = 721) | Controls (n = 1208) |
|
|---|---|---|---|
| n (%) | n (%) | ||
| Age (years) | 62.59 ± 8.18 | 62.92 ± 8.94 | .413 |
| Age (years) | |||
| <63 | 337 (46.74) | 579 (47.93) | .613 |
| ≥63 | 384 (53.26) | 629 (52.07) | |
| Sex | |||
| Male | 551 (76.42) | 899 (74.42) | .325 |
| Female | 170 (23.58) | 309 (25.58) | |
| Tobacco use | |||
| Never | 342 (47.43) | 881 (72.93) |
|
| Ever | 379 (52.57) | 327 (27.07) | |
| Alcohol use | |||
| Never | 502 (69.63) | 1046 (86.59) |
|
| Ever | 219 (30.37) | 162 (13.41) | |
| BMI (kg/m2) | |||
| <24 | 527 (73.09) | 651 (53.89) |
|
| ≥24 | 194 (26.01) | 557 (46.11) | |
Bold values are statistically significant (P < .05).
Abbreviation: BMI, body mass index.
Genotype frequencies of BTLA tagging SNPs and ESCC risk
| Genotype | ESCC cases (n = 721) | Controls (n = 1208) | Crude OR (95% CI) |
| Adjusted OR (95% CI) |
| ||
|---|---|---|---|---|---|---|---|---|
| n | % | N | % | |||||
| rs2171513 G > A | ||||||||
| GG | 463 | 64.85 | 774 | 64.45 | 1.00 | 1.00 | ||
| GA | 227 | 31.79 | 380 | 31.64 | 1.00 (0.82‐1.22) | .989 | 0.99 (0.80‐1.22) | .888 |
| AA | 24 | 3.36 | 47 | 3.91 | 0.85 (0.52‐1.42) | .539 | 0.80 (0.47‐1.37) | .424 |
| GA + AA | 251 | 35.15 | 427 | 35.55 | 0.98 (0.81‐1.19) | .860 | 0.96 (0.79‐1.19) | .730 |
| GG + GA | 690 | 96.64 | 1154 | 96.09 | 0.85 (0.52‐1.41) | .537 | 0.81 (0.47‐1.37) | .430 |
| A allele | 275 | 19.26 | 474 | 19.73 | ||||
| rs3112270 A > G | ||||||||
| AA | 387 | 54.43 | 614 | 51.12 | 1.00 | 1.00 | ||
| AG | 259 | 36.43 | 500 | 41.64 | 0.82 (0.68‐1.00) | .051 | 0.84 (0.68‐1.04) | .109 |
| GG | 65 | 9.14 | 87 | 7.24 | 1.19 (0.84‐1.68) | .335 | 1.27 (0.88‐1.83) | .204 |
| AG + GG | 324 | 45.57 | 587 | 48.88 | 0.88 (0.73‐1.06) | .162 | 0.91 (0.74‐1.10) | .324 |
| AA + AG | 646 | 90.86 | 1114 | 92.76 | 1.29 (0.92‐1.80) | .139 | 1.36 (0.96‐1.95) | .087 |
| G allele | 389 | 27.36 | 674 | 28.06 | ||||
| rs1982809 G > A | ||||||||
| GG | 408 | 57.22 | 657 | 54.70 | 1.00 | 1.00 | ||
| GA | 252 | 35.35 | 464 | 38.64 | 0.88 (0.72‐1.07) | .182 | 0.93 (0.75‐1.15) | .488 |
| AA | 53 | 7.43 | 80 | 6.66 | 1.07 (0.74‐1.54) | .731 | 1.30 (0.88‐1.91) | .189 |
| GA + AA | 305 | 42.78 | 544 | 45.30 | 0.90 (0.75‐1.09) | .284 | 0.98 (0.80‐1.20) | .841 |
| GG + GA | 660 | 92.57 | 1121 | 93.34 | 1.13 (0.79‐1.61) | .521 | 1.34 (0.92‐1.95) | .134 |
| A allele | 358 | 25.11 | 624 | 25.98 | ||||
| rs16859629 T > C | ||||||||
| TT | 622 | 87.61 | 997 | 84.06 | 1.00 | 1.00 | ||
| TC | 85 | 11.97 | 181 | 15.27 |
|
| 0.82 (0.61‐1.10) | .191 |
| CC | 3 | 0.42 | 8 | 0.67 | 0.60 (0.16‐2.28) | .454 | 0.82 (0.21‐3.23) | .777 |
| CT + CC | 88 | 12.39 | 189 | 15.94 |
|
| 0.82 (0.62‐1.10) | .184 |
| TT + CT | 707 | 99.58 | 1178 | 99.33 | 0.63 (0.17‐2.36) | .489 | 0.85 (0.22‐3.33) | .809 |
| C allele | 91 | 6.31 | 197 | 8.15 | ||||
Bold values are statistically significant (P < .05).
Abbreviations: CI, confidence interval; OR, odds ratio.
Adjusted for age, sex, smoking status, and alcohol use in a logistic regression model.
Stratified analyses between BTLA rs2171513 G > A polymorphism and ESCC risk by sex, age, smoking status, and alcohol consumption
| Variable |
| Adjusted OR (95% CI) | ||||||
|---|---|---|---|---|---|---|---|---|
| GG | GA | AA | GG | GA vs GG | AA vs GG | GA/AA vs GG | AA vs (GG/GA) | |
| Sex | ||||||||
| Male | 352/579 | 175/278 | 18/38 | 1.00 |
1.01 (0.78‐1.29);
|
0.73 (0.40‐1.36);
|
0.97 (0.77‐1.24);
|
0.73 (0.40‐1.35);
|
| Female | 111/195 | 52/102 | 6/9 | 1.00 |
0.91 (0.60‐1.38);
|
1.04 (0.34‐3.17);
|
0.92 (0.61‐1.38);
|
1.07 (0.36‐3.24);
|
| Age | ||||||||
| <63 | 219/578 | 103/177 | 11/22 | 1.00 |
0.97 (0.70‐1.34);
|
0.76 (0.34‐1.71);
|
0.95 (0.69‐1.29);
|
0.77 (0.35‐1.72);
|
| ≥63 | 244/396 | 124/203 | 13/25 | 1.00 |
1.00 (0.75‐1.33);
|
0.80 (0.39‐1.64);
|
0.98 (0.74‐1.28);
|
0.80 (0.39‐1.63);
|
| Smoking status | ||||||||
| Never | 229/562 | 98/281 | 12/31 | 1.00 |
0.85 (0.64‐1.13);
|
1. (0.49‐2.02);
|
0.87 (0.66‐1.14);
|
1.05 (0.52‐2.11);
|
| Ever | 234/212 | 129/99 | 12/16 | 1.00 |
1.21 (0.87‐1.68);
|
0.62 (0.28‐1.36);
|
1.12 (0.81‐1.54);
|
0.58 (0.27‐1.27);
|
| Alcohol consumption | ||||||||
| Never | 315/678 | 163/323 | 20/39 | 1.00 |
1.08 (0.85‐1.38);
|
0.96 (0.54‐1.73);
|
1.07 (0.85‐1.35);
|
0.94 (0.53‐1.67);
|
| Ever | 148/96 | 64/57 | 4/8 | 1.00 |
0.66 (0.41‐1.05);
|
0.31 (0.08‐1.13);
|
|
0.35 (0.10‐1.29);
|
| BMI (kg/m2) | ||||||||
| <24 | 336/420 | 167/196 | 17/29 | 1.00 |
1.03 (0.79‐1.35);
|
0.66 (0.35‐1.25);
|
0.98 (0.76‐1.27);
|
0.65 (0.35‐1.23);
|
| ≥24 | 127/354 | 60/184 | 7/18 | 1.00 |
0.89 (0.62‐1.28);
|
1.35 (0.54‐3.40);
|
0.92 (0.65‐1.31);
|
1.40 (0.56‐3.51);
|
Bold values are statistically significant (P < .05).
Abbreviations: BMI, body mass index; CI, confidence interval; OR, odds ratio.
The genotyping was successful in 714 (99.03%) ESCC cases and 1201 (99.42%) controls for BTLA rs2171513 G > A.
Adjusted for age, sex, smoking status, and alcohol consumption (besides stratified factors accordingly) in a logistic regression model.
Stratified analyses between BTLA rs3112270 A > G polymorphism and ESCC risk by sex, age, smoking status, and alcohol consumption
| Variable |
| Adjusted OR (95% CI) | ||||||
|---|---|---|---|---|---|---|---|---|
| AA | GA | GG | AA | AG vs AA | GG vs AA | AG/ GG vs AA | GG vs (AA/AG) | |
| Sex | ||||||||
| Male | 305/459 | 190/372 | 48/64 | 1.00 |
|
1.18 (0.77‐1.81);
|
0.83 (0.66‐1.05);
|
1.31 (0.86‐1.99);
|
| Female | 82/155 | 69/128 | 17/23 | 1.00 |
1.08 (0.72‐1.62);
|
1.66 (0.82‐3.36);
|
1.16 (0.79‐1.71);
|
1.61 (0.82‐3.16);
|
| Age | ||||||||
| <63 | 180/291 | 118/239 | 33/47 | 1.00 |
0.77 (0.56‐1.06);
|
1.19 (0.71‐2.01);
|
0.84 (0.63‐1.13);
|
1.32 (0.80‐2.20);
|
| ≥63 | 207/323 | 141/261 | 32/40 | 1.00 |
0.88 (0.66‐1.16);
|
1.33 (0.79‐2.23);
|
0.94 (0.72‐1.22);
|
1.41 (0.85‐2.33);
|
| Smoking status | ||||||||
| Never | 179/446 | 124/361 | 34/67 | 1.00 |
0.86 (0.66‐1.14);
|
1.27 (0.80‐2.01);
|
0.93 (0.72‐1.20);
|
1.35 (0.87‐2.11);
|
| Ever | 208/168 | 135/139 | 31/20 | 1.00 |
0.80 (0.58‐1.10);
|
1.33 (0.72‐2.47);
|
0.86 (0.631‐1.17);
|
1.46 (0.80‐2.68);
|
| Alcohol consumption | ||||||||
| Never | 259/530 | 189/432 | 48/78 | 1.00 |
0.90 (0.71‐1.14);
|
1.28 (0.86‐1.92);
|
0.96 (0.77‐1.20);
|
1.34 (0.91‐1.99);
|
| Ever | 128/84 | 70/68 | 17/9 | 1.00 |
|
1.25 (0.49‐3.21);
|
0.68 (0.44‐1.06);
|
1.52 (0.61‐3.82);
|
| BMI (kg/m2) | ||||||||
| <24 | 296/325 | 176/267 | 46/53 | 1.00 |
|
1.03 (0.66‐1.61);
|
|
1.18 (0.76‐1.82);
|
| ≥24 | 91/289 | 83/233 | 19/34 | 1.00 |
1.16 (0.81‐1.65);
|
|
1.25 (0.897‐1.76);
|
1.78 (0.97‐3.27);
|
Bold values are statistically significant (P < .05).
Abbreviations: BMI, body mass index; CI, confidence interval; OR, odds ratio.
The genotyping was successful in 711 (98.61%) ESCC cases and 1201 (99.42%) controls for BTLA rs3112270 A > G.
Adjusted for age, sex, smoking status, and alcohol consumption (besides stratified factors accordingly) in a logistic regression model.
Stratified analyses between BTLA rs1982809 G > A polymorphism and ESCC risk by sex, age, smoking status, and alcohol consumption
| Variable |
| Adjusted OR (95% CI) | ||||||
|---|---|---|---|---|---|---|---|---|
| GG | GA | AA | GG | GA vs GG | AA vs GG | GA/AA vs GG | AA vs (GG/GA) | |
| Sex | ||||||||
| Male | 316/497 | 189/342 | 39/56 | 1.00 |
0.95 (0.74‐1.21);
|
1.37 (0.87‐2.17);
|
1.01 (0.80‐1.27);
|
1.40 (0.89‐2.20);
|
| Female | 92/160 | 63/122 | 14/24 | 1.00 |
0.89 (0.60‐1.34);
|
1.20 (0.58‐2.49);
|
0.94 (0.64‐1.38);
|
1.26 (0.62‐2.55);
|
| Age | ||||||||
| <63 | 192/302 | 111/232 | 30/43 | 1.00 |
0.78 (0.57‐1.07);
|
1.36 (0.80‐2.34);
|
0.86 (0.64‐1.16);
|
1.51 (0.89‐2.55);
|
| ≥63 | 216/355 | 141/232 | 23/37 | 1.00 |
1.05 (0.80‐1.40);
|
1.18 (0.67‐2.07);
|
1.07 (0.82‐1.40);
|
1.16 (0.66‐2.01);
|
| Smoking status | ||||||||
| Never | 186/470 | 121/339 | 32/65 | 1.00 |
0.91 (0.69‐1.19);
|
1.25 (0.79‐2.00);
|
0.96 (0.74‐1.25);
|
1.30 (0.83‐2.05);
|
| Ever | 222/187 | 131/125 | 21/15 | 1.00 |
0.96 (0.69‐1.33);
|
1.46 (0.71‐2.97);
|
1.01 (0.74‐1.38);
|
1.48 (0.73‐2.99);
|
| Alcohol consumption | ||||||||
| Never | 270/558 | 189/410 | 39/72 | 1.00 |
0.96 (0.76‐1.22);
|
1.22 (0.79‐1.88);
|
1.00 (0.80‐1.25);
|
1.24 (0.82‐1.88);
|
| Ever | 138/99 | 63/54 | 14/8 | 1.00 |
0.76 (0.47‐1.23);
|
1.98 (0.72‐5.45);
|
0.88 (0.56‐1.38);
|
2.16 (0.80‐5.89);
|
| BMI (kg/m2) | ||||||||
| <24 | 306/355 | 180/245 | 33/45 | 1.00 |
0.88 (0.68‐1.14);
|
1.11 (0.67‐1.82);
|
0.91 (0.71‐1.16);
|
1.16 (0.72‐1.89);
|
| ≥24 | 102/302 | 72/219 | 20/35 | 1.00 |
1.02 (0.71‐1.46);
|
1.71 (0.93‐3.16);
|
1.11 (0.79‐1.57);
|
1.70 (0.94‐3.08);
|
Abbreviations: BMI, body mass index; CI, confidence interval; OR, odds ratio.
The genotyping was successful in 713 (98.89%) ESCC cases and 1201 (99.42%) controls for BTLA rs1982809 G > A.
Adjusted for age, sex, smoking status, and alcohol consumption (besides stratified factors accordingly) in a logistic regression model.
Stratified analyses between BTLA rs16859629 T > C polymorphism and ESCC risk by sex, age, smoking status, and alcohol consumption
| Variable |
| Adjusted OR (95% CI) | ||||||
|---|---|---|---|---|---|---|---|---|
| TT | TC | CC | TT | TC vs TT | CC vs TT | TC/CC vs TT | CC vs (TT/TC) | |
| Sex | ||||||||
| Male | 469/739 | 68/138 | 3/5 | 1.00 |
0.87 (0.63‐1.22);
|
1.73 (0.39‐7.65);
|
0.90 (0.65‐1.25);
|
1.77 (0.40‐7.82);
|
| Female | 153/258 | 17/43 | 0/3 | 1.00 |
0.68 (0.37‐1.25);
| ‐ |
0.63 (0.34‐1.14);
| ‐ |
| Age | ||||||||
| <63 | 295/481 | 37/85 | 0/3 | 1.00 |
0.79 (0.50‐1.24);
| ‐ |
0.75 (0.48‐1.18);
| ‐ |
| ≥63 | 327/516 | 48/96 | 3/5 | 1.00 |
0.85 (0.57‐1.25);
|
1.41 (0.32‐6.21);
|
0.87 (0.59‐1.27);
|
1.45 (0.33‐6.38);
|
| Smoking status | ||||||||
| Never | 292/716 | 42/143 | 3/7 | 1.00 |
0.74 (0.51‐1.08);
|
0.97 (0.24‐3.92);
|
0.75 (0.52‐1.08);
|
1.02 (0.25‐4.10);
|
| Ever | 330/281 | 43/38 | 0/1 | 1.00 |
0.98 (0.61‐1.58);
| ‐ |
0.95 (0.59‐1.54);
| ‐ |
| Alcohol consumption | ||||||||
| Never | 436/863 | 58/157 | 3/7 | 1.00 |
0.78 (0.56‐1.09);
|
0.99 (0.25‐3.99);
|
0.79 (0.57‐1.09);
|
1.03 (0.26‐4.14);
|
| Ever | 186/134 | 27/24 | 0/1 | 1.00 |
1.00 (0.52‐1.90);
| ‐ |
0.95 (0.50‐1.80);
| ‐ |
| BMI (kg/m2) | ||||||||
| <24 | 455/534 | 61/96 | 2/5 | 1.00 |
0.82 (0.57‐1.17);
|
0.75 (0.14‐3.97);
|
0.82 (0.57‐1.16);
|
0.77 (0.15‐4.09);
|
| ≥24 | 167/463 | 24/85 | 1/3 | 1.00 |
0.84 (0.51‐1.39);
|
1.07 (0.10‐11.24);
|
0.85 (0.52‐1.39);
|
1.09 (0.10‐11.53);
|
Abbreviations: BMI, body mass index; CI, confidence interval; OR, odds ratio.
The genotyping was successful in 710 (98.47%) ESCC cases and 1186 (98.18%) controls for BTLA rs16859629 T > C.
Adjusted for age, sex, smoking status, and alcohol consumption (besides stratified factors accordingly) in a logistic regression model.