Literature DB >> 29684198

Neutral Theory and the Somatic Evolution of Cancer.

Vincent L Cannataro1, Jeffrey P Townsend1,2,3.   

Abstract

Kimura's neutral theory argued that positive selection was not responsible for an appreciable fraction of molecular substitutions. Correspondingly, quantitative analysis reveals that the vast majority of substitutions in cancer genomes are not detectably under selection. Insights from the somatic evolution of cancer reveal that beneficial substitutions in cancer constitute a small but important fraction of the molecular variants. The molecular evolution of cancer community will benefit by incorporating the neutral theory of molecular evolution into their understanding and analysis of cancer evolution-and accepting the use of tractable, predictive models, even when there is some evidence that they are not perfect.

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Year:  2018        PMID: 29684198      PMCID: PMC5967571          DOI: 10.1093/molbev/msy079

Source DB:  PubMed          Journal:  Mol Biol Evol        ISSN: 0737-4038            Impact factor:   16.240


  83 in total

1.  Identification of new molecular markers for assembling the eukaryotic tree of life.

Authors:  Yonas I Tekle; Jessica R Grant; Alexandra M Kovner; Jeffrey P Townsend; Laura A Katz
Journal:  Mol Phylogenet Evol       Date:  2010-03-17       Impact factor: 4.286

2.  Repeating sequences and gene duplication in proteins.

Authors:  A D McLachlan
Journal:  J Mol Biol       Date:  1972-03-14       Impact factor: 5.469

Review 3.  Population genetics history: a personal view.

Authors:  J F Crow
Journal:  Annu Rev Genet       Date:  1987       Impact factor: 16.830

4.  Detection of Regional Variation in Selection Intensity within Protein-Coding Genes Using DNA Sequence Polymorphism and Divergence.

Authors:  Zi-Ming Zhao; Michael C Campbell; Ning Li; Daniel S W Lee; Zhang Zhang; Jeffrey P Townsend
Journal:  Mol Biol Evol       Date:  2017-11-01       Impact factor: 16.240

Review 5.  Intra-tumour heterogeneity: a looking glass for cancer?

Authors:  Andriy Marusyk; Vanessa Almendro; Kornelia Polyak
Journal:  Nat Rev Cancer       Date:  2012-04-19       Impact factor: 60.716

Review 6.  Inferring the Origin of Metastases from Cancer Phylogenies.

Authors:  Woo Suk Hong; Max Shpak; Jeffrey P Townsend
Journal:  Cancer Res       Date:  2015-08-10       Impact factor: 12.701

Review 7.  Tumors as caricatures of the process of tissue renewal: prospects for therapy by directing differentiation.

Authors:  G B Pierce; W C Speers
Journal:  Cancer Res       Date:  1988-04-15       Impact factor: 12.701

8.  Lineage tracing reveals Lgr5+ stem cell activity in mouse intestinal adenomas.

Authors:  Arnout G Schepers; Hugo J Snippert; Daniel E Stange; Maaike van den Born; Johan H van Es; Marc van de Wetering; Hans Clevers
Journal:  Science       Date:  2012-08-01       Impact factor: 47.728

9.  Cancer evolution is associated with pervasive positive selection on globally expressed genes.

Authors:  Sheli L Ostrow; Ruth Barshir; James DeGregori; Esti Yeger-Lotem; Ruth Hershberg
Journal:  PLoS Genet       Date:  2014-03-06       Impact factor: 5.917

10.  A restricted cell population propagates glioblastoma growth after chemotherapy.

Authors:  Jian Chen; Yanjiao Li; Tzong-Shiue Yu; Renée M McKay; Dennis K Burns; Steven G Kernie; Luis F Parada
Journal:  Nature       Date:  2012-08-23       Impact factor: 49.962

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  9 in total

1.  Tumorigenesis as the Paradigm of Quasi-neutral Molecular Evolution.

Authors:  Bingjie Chen; Zongkun Shi; Qingjian Chen; Xu Shen; Darryl Shibata; Haijun Wen; Chung-I Wu
Journal:  Mol Biol Evol       Date:  2019-07-01       Impact factor: 16.240

2.  Cancer Relevance of Human Genes.

Authors:  Tao Qing; Hussein Mohsen; Vincent L Cannataro; Michal Marczyk; Mariya Rozenblit; Julia Foldi; Michael Murray; Jeffrey P Townsend; Yuval Kluger; Mark Gerstein; Lajos Pusztai
Journal:  J Natl Cancer Inst       Date:  2022-07-11       Impact factor: 11.816

3.  Attribution of Cancer Origins to Endogenous, Exogenous, and Preventable Mutational Processes.

Authors:  Vincent L Cannataro; Jeffrey D Mandell; Jeffrey P Townsend
Journal:  Mol Biol Evol       Date:  2022-05-03       Impact factor: 8.800

4.  Emerging Frontiers in the Study of Molecular Evolution.

Authors:  David A Liberles; Belinda Chang; Kerry Geiler-Samerotte; Aaron Goldman; Jody Hey; Betül Kaçar; Michelle Meyer; William Murphy; David Posada; Andrew Storfer
Journal:  J Mol Evol       Date:  2020-04       Impact factor: 2.395

5.  Inference of mutability landscapes of tumors from single cell sequencing data.

Authors:  Viachaslau Tsyvina; Alex Zelikovsky; Sagi Snir; Pavel Skums
Journal:  PLoS Comput Biol       Date:  2020-11-30       Impact factor: 4.475

6.  Wagging the long tail of drivers of prostate cancer.

Authors:  Vincent L Cannataro; Jeffrey P Townsend
Journal:  PLoS Genet       Date:  2019-01-17       Impact factor: 5.917

7.  CellCoal: Coalescent Simulation of Single-Cell Sequencing Samples.

Authors:  David Posada
Journal:  Mol Biol Evol       Date:  2020-05-01       Impact factor: 16.240

8.  Molecular Biology and Evolution of Cancer: From Discovery to Action.

Authors:  Jason A Somarelli; Heather Gardner; Vincent L Cannataro; Ella F Gunady; Amy M Boddy; Norman A Johnson; Jeffrey Nicholas Fisk; Stephen G Gaffney; Jeffrey H Chuang; Sheng Li; Francesca D Ciccarelli; Anna R Panchenko; Kate Megquier; Sudhir Kumar; Alex Dornburg; James DeGregori; Jeffrey P Townsend
Journal:  Mol Biol Evol       Date:  2020-02-01       Impact factor: 16.240

9.  The somatic molecular evolution of cancer: Mutation, selection, and epistasis.

Authors:  Krishna Dasari; Jason A Somarelli; Sudhir Kumar; Jeffrey P Townsend
Journal:  Prog Biophys Mol Biol       Date:  2021-08-06       Impact factor: 4.799

  9 in total

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