Literature DB >> 32045511

Retroelement origins of pre-mRNA splicing.

Daniel B Haack1, Navtej Toor1.   

Abstract

Recent cryo-EM structures of a group II intron caught in the process of invading DNA have given new insight into the mechanisms of both splicing and retrotransposition. Conformational dynamics involving the branch-site helix domain VI are responsible for substrate exchange between the two steps of splicing. These structural rearrangements have strong parallels with the movement of the branch-site helix in the spliceosome during catalysis. This is strong evidence for the spliceosome evolving from a group II intron ancestor. We observe other topological changes in the overall structure of the catalytic domain V that may occur in the spliceosome as well. Therefore, studying group II introns not only provides us with insight into the evolutionary origins of the spliceosome, but also may inform the design of experiments to further probe structure-function relationships in this eukaryotic splicing apparatus. This article is categorized under: RNA Processing > Splicing Mechanisms RNA Structure and Dynamics > RNA Structure, Dynamics, and Chemistry RNA Structure and Dynamics > Influence of RNA Structure in Biological Systems RNA Evolution and Genomics > RNA and Ribonucleoprotein Evolution.
© 2020 Wiley Periodicals, Inc.

Entities:  

Keywords:  RNA splicing; group II intron; spliceosome

Mesh:

Substances:

Year:  2020        PMID: 32045511      PMCID: PMC7340585          DOI: 10.1002/wrna.1589

Source DB:  PubMed          Journal:  Wiley Interdiscip Rev RNA        ISSN: 1757-7004            Impact factor:   9.957


  36 in total

1.  Mechanism of maturase-promoted group II intron splicing.

Authors:  M Matsuura; J W Noah; A M Lambowitz
Journal:  EMBO J       Date:  2001-12-17       Impact factor: 11.598

Review 2.  Group II introns: mobile ribozymes that invade DNA.

Authors:  Alan M Lambowitz; Steven Zimmerly
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-08-01       Impact factor: 10.005

3.  Introns and the origin of nucleus-cytosol compartmentalization.

Authors:  William Martin; Eugene V Koonin
Journal:  Nature       Date:  2006-03-02       Impact factor: 49.962

4.  The generality of self-splicing RNA: relationship to nuclear mRNA splicing.

Authors:  T R Cech
Journal:  Cell       Date:  1986-01-31       Impact factor: 41.582

5.  A tripartite group II intron in mitochondria of an angiosperm plant.

Authors:  V Knoop; M Altwasser; A Brennicke
Journal:  Mol Gen Genet       Date:  1997-07

6.  Rearrangements within the U6 snRNA Core during the Transition between the Two Catalytic Steps of Splicing.

Authors:  Katarzyna Eysmont; Katarzyna Matylla-Kulińska; Agata Jaskulska; Marcin Magnus; Maria M Konarska
Journal:  Mol Cell       Date:  2019-06-19       Impact factor: 17.970

7.  The 2'-OH group at the group II intron terminus acts as a proton shuttle.

Authors:  Michael Roitzsch; Olga Fedorova; Anna Marie Pyle
Journal:  Nat Chem Biol       Date:  2010-01-31       Impact factor: 15.040

8.  Origin and evolution of retroelements based upon their reverse transcriptase sequences.

Authors:  Y Xiong; T H Eickbush
Journal:  EMBO J       Date:  1990-10       Impact factor: 11.598

9.  Structural basis for the second step of group II intron splicing.

Authors:  Russell T Chan; Jessica K Peters; Aaron R Robart; Timothy Wiryaman; Kanagalaghatta R Rajashankar; Navtej Toor
Journal:  Nat Commun       Date:  2018-11-08       Impact factor: 14.919

10.  Visualizing group II intron catalysis through the stages of splicing.

Authors:  Marco Marcia; Anna Marie Pyle
Journal:  Cell       Date:  2012-10-26       Impact factor: 41.582

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  5 in total

1.  Distinct Expansion of Group II Introns During Evolution of Prokaryotes and Possible Factors Involved in Its Regulation.

Authors:  Masahiro C Miura; Shohei Nagata; Satoshi Tamaki; Masaru Tomita; Akio Kanai
Journal:  Front Microbiol       Date:  2022-02-28       Impact factor: 5.640

2.  Identification of Group II Intron RmInt1 Binding Sites in a Bacterial Genome.

Authors:  María Dolores Molina-Sánchez; Fernando Manuel García-Rodríguez; Eduardo Andrés-León; Nicolás Toro
Journal:  Front Mol Biosci       Date:  2022-02-25

3.  Unique and Repeated Stwintrons (Spliceosomal Twin Introns) in the Hypoxylaceae.

Authors:  Erzsébet Fekete; Fruzsina Pénzes; Norbert Ág; Viktória Ág-Rácz; Erzsébet Sándor; Claudio Scazzocchio; Michel Flipphi; Levente Karaffa
Journal:  J Fungi (Basel)       Date:  2022-04-13

4.  Transposon clusters as substrates for aberrant splice-site activation.

Authors:  Maria Elena Vilar Alvarez; Martin Chivers; Ivana Borovska; Steven Monger; Eleni Giannoulatou; Jana Kralovicova; Igor Vorechovsky
Journal:  RNA Biol       Date:  2020-09-23       Impact factor: 4.652

Review 5.  Prokaryotic reverse transcriptases: from retroelements to specialized defense systems.

Authors:  Alejandro González-Delgado; Mario Rodríguez Mestre; Francisco Martínez-Abarca; Nicolás Toro
Journal:  FEMS Microbiol Rev       Date:  2021-11-23       Impact factor: 16.408

  5 in total

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