Literature DB >> 32034051

How to turn an organism into a model organism in 10 'easy' steps.

Benjamin J Matthews1, Leslie B Vosshall2,3,4.   

Abstract

Many of the major biological discoveries of the 20th century were made using just six species: Escherichia coli bacteria, Saccharomyces cerevisiae and Schizosaccharomyces pombe yeast, Caenorhabditis elegans nematodes, Drosophila melanogaster flies and Mus musculus mice. Our molecular understanding of the cell division cycle, embryonic development, biological clocks and metabolism were all obtained through genetic analysis using these species. Yet the 'big 6' did not start out as genetic model organisms (hereafter 'model organisms'), so how did they mature into such powerful systems? First, these model organisms are abundant human commensals: they are the bacteria in our gut, the yeast in our beer and bread, the nematodes in our compost pile, the flies in our kitchen and the mice in our walls. Because of this, they are cheaply, easily and rapidly bred in the laboratory and in addition were amenable to genetic analysis. How and why should we add additional species to this roster? We argue that specialist species will reveal new secrets in important areas of biology and that with modern technological innovations like next-generation sequencing and CRISPR-Cas9 genome editing, the time is ripe to move beyond the big 6. In this review, we chart a 10-step path to this goal, using our own experience with the Aedes aegypti mosquito, which we built into a model organism for neurobiology in one decade. Insights into the biology of this deadly disease vector require that we work with the mosquito itself rather than modeling its biology in another species.
© 2020. Published by The Company of Biologists Ltd.

Entities:  

Keywords:  Behavior; CRISPR-Cas9; Genetics; Genome; Mosquito; Transgenesis

Mesh:

Year:  2020        PMID: 32034051      PMCID: PMC7790198          DOI: 10.1242/jeb.218198

Source DB:  PubMed          Journal:  J Exp Biol        ISSN: 0022-0949            Impact factor:   3.312


  95 in total

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Review 2.  Genome editing. The new frontier of genome engineering with CRISPR-Cas9.

Authors:  Jennifer A Doudna; Emmanuelle Charpentier
Journal:  Science       Date:  2014-11-28       Impact factor: 47.728

3.  Genetic transformation of the mosquito Aedes aegypti by micro-injection of DNA.

Authors:  A C Morris; P Eggleston; J M Crampton
Journal:  Med Vet Entomol       Date:  1989-01       Impact factor: 2.739

Review 4.  Optogenetics and thermogenetics: technologies for controlling the activity of targeted cells within intact neural circuits.

Authors:  Jacob G Bernstein; Paul A Garrity; Edward S Boyden
Journal:  Curr Opin Neurobiol       Date:  2011-11-24       Impact factor: 6.627

Review 5.  Life with 6000 genes.

Authors:  A Goffeau; B G Barrell; H Bussey; R W Davis; B Dujon; H Feldmann; F Galibert; J D Hoheisel; C Jacq; M Johnston; E J Louis; H W Mewes; Y Murakami; P Philippsen; H Tettelin; S G Oliver
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6.  Genetic and Transgenic Reagents for Drosophila simulans, D. mauritiana, D. yakuba, D. santomea, and D. virilis.

Authors:  David L Stern; Justin Crocker; Yun Ding; Nicolas Frankel; Gretchen Kappes; Elizabeth Kim; Ryan Kuzmickas; Andrew Lemire; Joshua D Mast; Serge Picard
Journal:  G3 (Bethesda)       Date:  2017-04-03       Impact factor: 3.154

Review 7.  The joy of balancers.

Authors:  Danny E Miller; Kevin R Cook; R Scott Hawley
Journal:  PLoS Genet       Date:  2019-11-07       Impact factor: 5.917

8.  A GAL4-driver line resource for Drosophila neurobiology.

Authors:  Arnim Jenett; Gerald M Rubin; Teri-T B Ngo; David Shepherd; Christine Murphy; Heather Dionne; Barret D Pfeiffer; Amanda Cavallaro; Donald Hall; Jennifer Jeter; Nirmala Iyer; Dona Fetter; Joanna H Hausenfluck; Hanchuan Peng; Eric T Trautman; Robert R Svirskas; Eugene W Myers; Zbigniew R Iwinski; Yoshinori Aso; Gina M DePasquale; Adrianne Enos; Phuson Hulamm; Shing Chun Benny Lam; Hsing-Hsi Li; Todd R Laverty; Fuhui Long; Lei Qu; Sean D Murphy; Konrad Rokicki; Todd Safford; Kshiti Shaw; Julie H Simpson; Allison Sowell; Susana Tae; Yang Yu; Christopher T Zugates
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9.  Genomic Access to Monarch Migration Using TALEN and CRISPR/Cas9-Mediated Targeted Mutagenesis.

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10.  The Transcriptional Response of Aedes aegypti with Variable Extrinsic Incubation Periods for Dengue Virus.

Authors:  Cassandra Koh; Scott L Allen; Rosemarie I Herbert; Elizabeth A McGraw; Stephen F Chenoweth
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1.  Distinct navigation behaviors in Aedes, Anopheles and Culex mosquito larvae.

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Review 2.  Genetic and viral approaches to record or manipulate neurons in insects.

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5.  Multiplexed drug-based selection and counterselection genetic manipulations in Drosophila.

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6.  Mobilizing molluscan models and genomes in biology.

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Review 7.  Diverse Defenses: A Perspective Comparing Dipteran Piwi-piRNA Pathways.

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8.  Twelve quick steps for genome assembly and annotation in the classroom.

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Review 9.  The Diversity of Muscles and Their Regenerative Potential across Animals.

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