Literature DB >> 32023434

Nanosecond-Timescale Dynamics and Conformational Heterogeneity in Human GCK Regulation and Disease.

Shawn M Sternisha1, A Carl Whittington2, Juliana A Martinez Fiesco1, Carol Porter1, Malcolm M McCray1, Timothy Logan3, Cristina Olivieri4, Gianluigi Veglia5, Peter J Steinbach6, Brian G Miller7.   

Abstract

Human glucokinase (GCK) is the prototypic example of an emerging class of proteins with allosteric-like behavior that originates from intrinsic polypeptide dynamics. High-resolution NMR investigations of GCK have elucidated millisecond-timescale dynamics underlying allostery. In contrast, faster motions have remained underexplored, hindering the development of a comprehensive model of cooperativity. Here, we map nanosecond-timescale dynamics and structural heterogeneity in GCK using a combination of unnatural amino acid incorporation, time-resolved fluorescence, and 19F nuclear magnetic resonance spectroscopy. We find that a probe inserted within the enzyme's intrinsically disordered loop samples multiple conformations in the unliganded state. Glucose binding and disease-associated mutations that suppress cooperativity alter the number and/or relative population of these states. Together, the nanosecond kinetics characterized here and the millisecond motions known to be essential for cooperativity provide a dynamical framework with which we address the origins of cooperativity and the mechanism of activated, hyperinsulinemia-associated, noncooperative variants.
Copyright © 2020 Biophysical Society. All rights reserved.

Entities:  

Year:  2020        PMID: 32023434      PMCID: PMC7063420          DOI: 10.1016/j.bpj.2019.12.036

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  76 in total

Review 1.  The role of dynamics in allosteric regulation.

Authors:  Dorothee Kern; Erik R P Zuiderweg
Journal:  Curr Opin Struct Biol       Date:  2003-12       Impact factor: 6.809

2.  Inferring lifetime distributions from kinetics by maximizing entropy using a bootstrapped model.

Authors:  Peter J Steinbach
Journal:  J Chem Inf Comput Sci       Date:  2002 Nov-Dec

Review 3.  Fluorescence lifetime measurements and biological imaging.

Authors:  Mikhail Y Berezin; Samuel Achilefu
Journal:  Chem Rev       Date:  2010-05-12       Impact factor: 60.622

4.  Genetic incorporation of multiple unnatural amino acids into proteins in mammalian cells.

Authors:  Han Xiao; Abhishek Chatterjee; Sei-hyun Choi; Krishna M Bajjuri; Subhash C Sinha; Peter G Schultz
Journal:  Angew Chem Int Ed Engl       Date:  2013-11-08       Impact factor: 15.336

5.  Two-dimensional fluorescence lifetime correlation spectroscopy. 1. Principle.

Authors:  Kunihiko Ishii; Tahei Tahara
Journal:  J Phys Chem B       Date:  2013-09-12       Impact factor: 2.991

Review 6.  Cooperativity in monomeric enzymes with single ligand-binding sites.

Authors:  Carol M Porter; Brian G Miller
Journal:  Bioorg Chem       Date:  2011-11-17       Impact factor: 5.275

7.  Enhanced spontaneous DNA twisting/bending fluctuations unveiled by fluorescence lifetime distributions promote mismatch recognition by the Rad4 nucleotide excision repair complex.

Authors:  Sagnik Chakraborty; Peter J Steinbach; Debamita Paul; Hong Mu; Suse Broyde; Jung-Hyun Min; Anjum Ansari
Journal:  Nucleic Acids Res       Date:  2018-02-16       Impact factor: 16.971

Review 8.  An expanding genetic code.

Authors:  T Ashton Cropp; Peter G Schultz
Journal:  Trends Genet       Date:  2004-12       Impact factor: 11.639

9.  Dynamic activation of an allosteric regulatory protein.

Authors:  Shiou-Ru Tzeng; Charalampos G Kalodimos
Journal:  Nature       Date:  2009-11-19       Impact factor: 49.962

10.  Sugar binding to recombinant wild-type and mutant glucokinase monitored by kinetic measurement and tryptophan fluorescence.

Authors:  Bogumil Zelent; Stella Odili; Carol Buettger; Chiyo Shiota; Joseph Grimsby; Rebecca Taub; Mark A Magnuson; Jane M Vanderkooi; Franz M Matschinsky
Journal:  Biochem J       Date:  2008-07-15       Impact factor: 3.857

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  1 in total

1.  Gating-related Structural Dynamics of the MgtE Magnesium Channel in Membrane-Mimetics Utilizing Site-Directed Tryptophan Fluorescence.

Authors:  Satyaki Chatterjee; Rupasree Brahma; H Raghuraman
Journal:  J Mol Biol       Date:  2020-10-22       Impact factor: 5.469

  1 in total

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